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DnaseI Footprinting

Sugden labMcArdle Laboratory for Cancer Research University of Wisconsin-Madison Medical School DnaseI Footprinting (Based upon the protocol from the Promega Core Footprinting Kit) 5x Binding Buffer ...

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DNA extraction from Mutation Detecti

DNA extraction from Mutation Detection Enhancement (MDE) Gel Stained with Silver Nitrate Source: Contributed by Mohammad Reza Abbaszadegan et al. Abstract: Single strand conformational polymorphism ( ...

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琼脂糖回收DNA

Recovering DNA from agarose gels Paul N. Hengen Ph.D. (July 14 1999) Introduction ========Methods and reagents is a unique monthly column that highlights current discussions in the newsgroup bionet.mo ...

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DNA isolation extraction

CTAB TECHNIQUE / Method / Schedule / Protocol FOR DNA ISOLATION / DNA EXTRACTION FROM PLANT LEAF / LEAVES SAMPLES (see also DNA RNA double isolation procedure if both DNA and RNA are needed) Reagents ...

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NH4Ac and EtOH precipitation

NH4Ac and EtOH precipitation of DNA Add NH4Ac (10M stock or solid) to the sample for a final concentration of 2.5M mix (spin at 4℃ transfer the supernatant to a new tube; optional spin for extra puri ...

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PROTOCOL TO EXTRACT DNA FROM PA

PROTOCOL TO EXTRACT DNA FROM PARAFFIN BLOCKS 1.Cut 10-20X 10μm sections of formalin fixed paraffin samples into eppendorf tubes. 2.Add 1 ml xylene mix incubate at 55℃ for 15mins. Release pressure s ...

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In vitro mutagenesis using Altered Sites

Ⅰ.Isolation of Single Stranded DNA 1.Transform plasmid to be mutagenised into JM109. JM109 is endA1 recA1 gyrA96 thi hsdR17(rk- mk+) relA1 supE44 l- d(lac-proAB) traD36 proA+B+ lacIqdM15. JM109 must ...

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TMCF Protocols: Southern Blotting

BUFFERS: 1 ...

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分子标记常见问题及其对策

1.显性标记与选择效率 一部分分子标记系统如RAPD、AFLP具有显性或部分显性的特点,无法区分基因是纯合还是杂合,不能提供完整的遗传信息。Haley等(1994)提出相斥相(Repulsion-phase)的RAPD标记无论对显性还是隐性均可极大地提高选择效率,他们找到了和菜豆普通花叶病毒抗性基因bc-3连锁相引标记-1,相斥标记bc-2,用标记-1选择纯合抗病株、杂合体、纯合感病株分别占26. ...

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基因转染(磷酸钙-DNA共沉淀法)

磷酸钙-DNA 共沉淀法 核酸以磷酸钙-DNA 共沉淀物的形式出现时,可使DNA 附在细胞表面,利于细胞吞入摄取,或通过细胞膜脂相收缩时裂开的空隙进入细胞内,进入细胞的DNA 仅有1%~5%可以进入细胞核中,其中仅有不到1%的DNA 可以与细胞DNA 整合,在细胞中进行稳定表达,基因转导的频率大约为10-4,这项技术能用于任何DNA 导入哺乳类动物进行暂时性表达或长期转化的研究。此方法对于贴壁细 ...

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测序常见问题分析

1.如何测定引物的OD值? 用紫外分光光度计在260nm波长测定溶液的吸光度来定量,请注意紫外分光光度计的使用,测定时溶液的吸光度最好稀释到0.2-0.8之间(吸光度太高或太低会有较大的误差)。DNA 干粉用一定体积的水充分振荡溶解以后,取部分溶液稀释到1ml并在1ml标准比色皿中测定其吸光度,即为所测体积的OD值,进而可以计算出母液的OD值。 举例:您拿到一管干粉的DNA ,用1ml水溶解成 ...

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SOUTHERN BLOT的步骤

1. Run the gel as normal. Often for genomic southerns it is desirable to run long gels (18cm) over 4-6hrs. 2. Photograph the gel with a ruler adjacent to the molecular weight markers as a reference. 3 ...

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Problems in bisulfite sequencing reproducibility-DNA Met

I am having huge problems with bisulfite PCR. Southern analysis indicates that my DNA is unmethylated. My first bisulfite treatment also indicated that the DNA was unmethylated. Subsequent treatments ...

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Lambda(噬菌体)DNA Miniprep

David Harry Institute of Forest Genetics USDA Forest Service Pacific Southwest Research Station August 26 1993 Background : There are many published methods for mini-preps of DNA from lambda phage cl ...

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Frozen competent E. coli cells 【Carnegie Institution of Washington】

Inoculate a 5ml overnight of E.coli in LB+20 mM MgSO4. Next morninginoculate 250 ml LB+20 mM Mg++ in a 2L flask with about 2ml overnight culture.Grow at room temp (23℃)with good aeration (250rpm)to an ...

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Rapid DNA Preparation for Restriction Analysis

SOLUTIONS: Green and blue solutions from Clone Checker kit (cat. no. 11666-013). PROCEDURE: Place 3-6µl of an overnight culture in an Eppendorf tube (or spread part of a bacterial colony on the ...

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