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Overview on the Rule of Five

Abstract Table of Contents Literature Cited Abstract In the mid? to late 1990s, because of the drug discovery paradigm shift from phenotypic screens to combinatorial chemistry and high?throughput screening, the physicochemical properties of exploratory drug molecules displa

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Nucleotide Analogues as Probes for DNA and RNA Polymerases

Abstract Table of Contents Figures Literature Cited Abstract Nucleotide analogues represent a major class of anti?cancer and anti?viral drugs, and provide an extremely powerful tool for dissecting the mechanisms of DNA and RNA polymerases.

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Analyzing Binding Data

Abstract Table of Contents Materials Figures Literature Cited Abstract Measuring the rate and extent of radioligand binding provides information on the number of binding sites, and their affinity and acce

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ChIP‐Seq: A Method for Global Identification of Regulatory Elements in the Genome

Abstract Table of Contents Materials Figures Literature Cited Abstract This unit describes ChIP?Seq methodology, which involves chromatin immunoprecipitation (ChIP) followed by high?throughput sequencing

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Visualization of Kinase Activity with FRET‐Based Activity Biosensors

Abstract Table of Contents Materials Figures Literature Cited Abstract Genetically encodable FRET?based kinase activity reporters (KARs) enable real?time monitoring of kinase activity dynamics in living c

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The STINT‐NMR Method for Studying In‐cell Protein‐Protein Interactions

Abstract Table of Contents Figures Literature Cited Abstract This unit describes critical components and considerations required to study protein?protein structural interactions inside a living cell by using NMR spectroscopy (STINT?NMR). S

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Cell‐Based Hepatitis C Virus Infection Fluorescence Resonance Energy Transfer (FRET) Assay for Antiviral Compound Screening

Abstract Table of Contents Materials Figures Literature Cited Abstract Hepatitis C virus (HCV) affects an estimated 3% of the population and is a leading cause of chronic liver disease worldwide. Since HC

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Measuring Receptor Target Coverage: A Radioligand Competition Binding Protocol for Assessing the Association and Dissociation Rates of Unlabeled Compo

Abstract Table of Contents Materials Figures Literature Cited Abstract The kinetics of the ligand?receptor interaction is an important feature in lead optimization for new drug candidates. The protocol de

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Synthesis of Peptide‐Oligonucleotide Conjugates Using a Heterobifunctional Crosslinker

Abstract Table of Contents Materials Figures Literature Cited Abstract Peptide?oligonucleotide conjugates (POCs) are molecular chimeras composed of a nucleic acid moiety covalently attached to a polypepti

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Synthesis of a 2‐Selenothymidine Phosphoramidite and Its Incorporation into Oligodeoxyribonucleotides

Abstract Table of Contents Materials Figures Literature Cited Abstract The detailed synthetic protocol for a 2?selenothymidine phosphoramidite and its use in preparing Se?derivatized oligonucleotides are

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Experimental Design Considerations for In Vitro Non‐Natural Glycan Display via Metabolic Oligosaccharide Engineering

Abstract Table of Contents Materials Figures Literature Cited Abstract Metabolic oligosaccharide engineering (MOE) refers to a technique where non?natural monosaccharide analogs are introduced into living

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Pathway Modulators and Inhibitors

Abstract Table of Contents Literature Cited Abstract Inhibitors of specific cellular pathways are useful for investigating the roles of proteins of unknown function, and for selectively inhibiting a protein in complex pathways to uncover its relationships to other proteins

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Genome‐Wide Location Analysis by Pull Down of In Vivo Biotinylated Transcription Factors

Abstract Table of Contents Materials Figures Literature Cited Abstract Recent development of methods for genome?wide identification of transcription factor binding sites by chromatin immunoprecipitation (

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Overview of Receptor Allosterism

Abstract Table of Contents Figures Literature Cited Abstract In addition to the orthosteric site, which recognizes endogenous ligands, most G protein?coupled receptors (GPCRs) possess topographically distinct allosteric sites that can be r

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Synthesis of Peptidomimetic Conjugates of Cyclic Nucleoside Phosphonates

Abstract Table of Contents Materials Figures Literature Cited Abstract Cyclic nucleoside phosphonates connected through a P?O?C linkage to a promoiety represent a class of prodrugs designed to overcome th

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Time‐Dependent Thermocontrol of the Hydrophilic and Lipophilic Properties of DNA Oligonucleotide Prodrugs

Abstract Table of Contents Materials Figures Literature Cited Abstract This unit describes the preparation of alkylthioalkylated and formamidoalkylated alcohols, an amidoalkylated alcohol, a hydroxylalkylat

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Supported Membrane Formation, Characterization, Functionalization, and Patterning for Application in Biological Science and Technology

Abstract Table of Contents Materials Figures Literature Cited Supplementary Material Abstract Supported membranes, formed as a single conti

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Imaging of Endogenous RNA Using Genetically Encoded Probes

Abstract Table of Contents Materials Figures Literature Cited Abstract Imaging of RNAs in single cells revealed their localized transcription and specific function. Such information cannot be obtained fro

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Quantification of Allosteric Interactions at G Protein–Coupled Receptors Using Radioligand Binding Assays

Abstract Table of Contents Materials Figures Literature Cited Abstract Allosteric interactions involve the simultaneous binding of two ligands to the same receptor. An allosteric modulator causes a confor

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Syntheses of DNA Duplexes That Contain a N4C‐Alkyl‐N4C Interstrand Cross‐Link

Abstract Table of Contents Materials Figures Literature Cited Abstract This unit describes a simple procedure for preparing short DNA duplexes that contain a single N4C?alkyl?N4C interstrand cross?link. The

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