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Fluorescence Methods in the Study of Small GTP-Binding Proteins

A great variety of small guanosine triphosphate (GTP)-binding proteins are known, and each of these in turn interacts with a variety of regulatory proteins, including guanine-nucleotide dissociation inhibitors (GDIs), GTPase-activating proteins (GAPs) and guaninine nucleo ...

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Using cDNA-Representational Difference Analysis (cDNA-RDA) in Combination with Microarrays to Identify Rac Regulated Genes

Small GTPases of the Ras superfamily are molecular switches which cycle between an active guanosine triphosphate (GTP)-bound and an inactive guanosine diphosphate (GDP)-bound state. They integrate signals from the cell surface to the nucleus, regulating important cellular acti ...

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Effects of Rho Family GTPases on Cell-Cell Adhesion

Cell-cell adhesion is dynamically rearranged in various cellular processes, including cell scattering, wound healing, developmental morphogenesis, and tumor metastasis. Cadherins are Ca2+-dependent homophilic cell-cell adhesion molecules (1) and bind β-catenin or pla ...

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Cell Motility and Invasion Assays

Cell motility and invasion play an essential role in a wide range of biological functions, including many stages of development, wound healing, and immune function. Deregulated motile behavior is believed to contribute to pathological processes such as metastasis, tumor angiogene ...

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Isolation of Regulatory Proteins for the Rab3 Subfamily GTPases

The Rab small GTPase family consists of over sixty members, and is implicated in intracellular vesicle trafficking, which includes exocytosis, endocytosis, and transcytosis (1–5). All the Rab GTPases have unique C-terminal structures, which undergo posttranslational modific ...

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Analysis and Preparation of Stable Complexes between Rab GTPases, Rab Escort Protein, and Rab Geranylgeranyl Transferase

Rab proteins are small Ras-like GTPases that regulate vesicular trafficking events in the cell. More than 50 Rabs have been described in mammalian cells (1), each with a specific subcellular localization reflecting the functional specificity of Rabs to specific trafficking steps (2–5). ...

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Preparation of Myristoylated Arf1 and Arf6 Proteins

ADP-ribosylation factor (Arf) proteins were first identified as cofactors for cholera toxin-catalyzed ADP-ribosylation of the heterotrimeric G-protein Gs. Subsequent cloning led to the discovery that Arfs were part of a group of GTP-binding proteins that is a subfamily of the ras supe ...

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ARF-Directed Guanine-Nucleotide-Exchange (GEP) Proteins

TheADP-ribosylation factor proteins (ARFs) are ~20-kDa guanine-nucleotidebinding proteins found in all eukaryotic cells, which are a critical part of the minimum machinery required for vesicle formation at the Golgi and other membranes (1–3). The six mammalian ARFs have been grouped ...

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Arf6 and its Role in Cytoskeletal Modulation

The Arf family of GTP-binding proteins is highly conserved and widely expressed in eukaryotic cells. Arfs can be divided into three classes based on amino-acid sequence. Class I Arfs include mammalian Arfs 1-3, Class II includes Arfs 4, and 5, and Class III Arfs have only one member-Arf6 (1). All Arf prote ...

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ARF GTPase-Activating Protein 1

ARF-family GTPases function as regulators of multiple membrane trafficking processes in all eukaryotic cells. Six ARF proteins have been identified in humans, all of which contain a myristoyl residue, attached to their aminoterminal glycine by an amide bond. In their active, guanosine t ...

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The Use of Permeabilized Cell Systems to Study Nuclear Transport

Nucleocytoplasmic transport occurs through nuclear pore complexes (NPC), macromolecular structures which span the nuclear envelope (1). NPCs contain aqueous channels with a diameter of ~9 nm, allowing ions, metabolites, and small proteins to passively diffuse between the nucle ...

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Analysis of Nuclear Protein Import and Export In Vitro Using Fluorescent Cargoes

Nucleocytoplasmic transport of protein is central to the regulation of many cellular functions. Nuclear import and export takes place through nuclear pore complexes (NPCs; reviewed in refs. 1 and 2), large supramolecular structures that span the nuclear envelope. Cargo proteins cont ...

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Characterization of the Effects of RanGTP on the Microtubule Cytoskeleton

Ran is a GTPase of the Ras superfamily. Until recently, its primary role was believed to be in interphase, regulating nucleocytoplasmic transport (1). However, recent studies have identified additional roles for Ran in regulating spindle assembly and maintenance in mitosis (2-10). In add ...

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Interfering with Ras Signaling Using Membrane-Permeable Peptides or Drugs

During the last two decades since the first oncogene product called v-Src was identified as a constitutively activated mutant of a normal mitogenic gene (proto-oncogene) encoding a Tyr kinase called c-Src in early 1980s, it was firmly established that the malignant transformation of norm ...

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Ras and Rac as Activators of Reactive Oxygen Species (ROS)

The investigation into the relationship between reactive oxygen species (ROS) and the signaling pathways of the Ras family of small GTPases has experienced a recent surge in interest. Known to cause DNA damage, and implicated in disease processes as wide-ranging as atherosclerosis and ki ...

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A Ras-Based Module to Generate 32P-Labeled Fusion Proteins for Blot Overlays

A variety of techniques can be used to find protein partners, including immunoprecipitation, affinity chromatography, blot overlays, and yeast twohybrid screening. Of these, the blot overlay protocol of sodium dodecyl sulfate (SDS)-acrylamide-gel-separated proteins provi ...

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Determination of the Activity of Rho-Like GTPases in Cells

Rho-like GTPases, including RhoA, Rac1 and Cdc42, have been implicated in the control of a wide range of biological processes such as the organization of cytoskeletal structures, adhesion, motility, transcriptional activation, and cell-cycle progression (1–3). The Rho-like GTPases ...

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Introduction of Dominant Inhibitory Proteins Directed Against ROK and MRCK Kinases

Gene-specific disruption and protein-specific inhibition techniques are powerful tools for the study of protein functions in vivo. A number of methods have been applied to investigate the loss of protein function. These include generation of knockout animals or cell lines, applicat ...

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Application of Genetically Modified Feeder Cells for Culture of Keratinocytes

In living bodies, there are many cell-cell interactions, including epithelial-mesenchymal interactions, to control cell growth and differentiation, and disturbances to such systems are believed to be a critical reason for many diseases, including cancer. Recently, many growth f ...

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Keratinocyte Culture in the Absence of Substrate Attachment

This chapter deals with experimental protocols and considerations related to the culture of epithelial cells under anchorage-independent conditions in liquid media. This technique has proven to be a powerful tool in studying the effects of loss of extracellular matrix interaction ...

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