• 我要登录|
  • 免费注册
    |
  • 我的丁香通
    • 企业机构:
    • 成为企业机构
    • 个人用户:
    • 个人中心
  • 移动端
    移动端
丁香通 logo丁香实验_LOGO
搜实验

    大家都在搜

      大家都在搜

        0 人通过求购买到了急需的产品
        免费发布求购
        发布求购
        点赞
        收藏
        wx-share
        分享

        Hiro Hirai BAC-FISH Protocol

        互联网

        1056

         

        Hiro Hirai 's BAC-FISH Protocol

        Overview

        This protocol is a modification of the standard FISH protocol published by Hiro Hirai and Phil LoVerde in Parasitology Today (1995, 11(8) p 310-314) that has been optimised for use with BAC probes and should be read in conjunction with the published protocol.

        This protocol uses the BIOPRIME reaction kit from GibcoBRL to prepare biotin-labelled BAC DNA which is detected using FITC-Avidin (Vector Labs, DCS grade). Reagents from other manufacturers may work equally well but have not been tested.


         

        (1) Labeling of BAC clones

        (a) take 10µl of standard stock solution of purified BAC clone and denature by boiling for 5 minutes, then snap cool in ice-water mix

        (b) prepare 50 µl of labelling mixture as follows:

        10µl denatured DNA
        5µl 10x biotinylated dNTP stock (BIOPRIME reaction kit)
        20µl 2.5x buffer solution (BIOPRIME reaction kit)
        14µl ddH2 O
        1µl Klenow enzyme (BIOPRIME reaction kit)

        (c) incubate at 37o C for 3 hours

        (d) stop reaction by heating to 65o C for 10 minutes

         


        (2) Ethanol precipitation

         

        (a) add together:

        labelling mix (from 1.d) - 50µl
        147µl ddH2 O
        74µl 4M NaCl
        2µl salmon sperm DNA (10µg/µl stock)
        467µl cold (-20o C) ethanol

        (b) keep at 4o C for 60 minutes

        (c) centriufuge at 15,000 RPM at 4o C for 5 minutes

        (d) remove supernatant, briefly dry pellet and then resuspend in 40 µl ultrapure formamide (Boehringer Mannheim or Intergene (Cat. No. S4117))

         


         

        (3) Hybridization

        (a) hybridization buffer:

        15µl 20 x SSC
        45µl 30% Dextran Sulphate

        (b) hybridization mixture:

        30µl hybridization buffer (from 3.a)
        20µl labelled probe redissolved in formamide (from 2.d)

        (c) denature the hybridization mixture at 72o C for 10 minutes

        (d) denature the chromosome spread as folows:

        0.05M NaOH in 2 x SSC - 4.5 minutes
        70% ethanol - 5 minutes
        99.5% ethanol - 5 minutes
        air dry

        (e) apply the denatured probe to the chromosome spread, cover with parafilm (acting as a coverslip) and incubate in a humid chamber at 37o C for 12-16 hours

         


         

        (4) Post-hybridisation treatment / detection

        (a) wash:

        40% formamide (standard grade) in 2 x SSC at 45o C for 10 minutes
        2 x SSC at 45o C for 10 minutes
        2 x SSC at room temperature for 10 minutes

        (b) immersion and blocking:

        BN buffer (0.1M NaHCO3 / 0.1% NP-40) or BI buffer (0.1M NaHCO3 / 0.1% IGEPAL CA-630 (Sigma I-3021 (as NP-40 may no longer be available))) for 5 minutes
        5% non fat milk in BN or BI buffer for 10 minutes

        (c) detection:

        50µl of 5% non fat milk in BN or BI buffer containing 4µg FITC-Avidin (Vector Labs, DCS grade) for 60 minutes

        (d) wash in BN or BI buffer, 2 x 10 minutes, with gentle shaking

        (e) mount in antifade solution containing PI and DAPI as counterstains

         

        ad image
        提问
        扫一扫
        丁香实验小程序二维码
        实验小助手
        丁香实验公众号二维码
        扫码领资料
        反馈
        TOP
        打开小程序