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        Standard Ligation

        互联网

        1613
         
         
         
        Prepare a ligation mix:

         

        Ligation Mix (2x)
         
           
        10x ligase buffer 1.0 ml
        digested vector
        (0.1 mg/ml)
        1.0 ml
        H2 O 6.0 ml
        total 8.0 ml
         

        divide ligation mix into two Eppendorf tubes

         

        Ligation Rxn
         
          Insert Control
        ligation mix 4.0 ml 4.0 ml
        insert 1.0 ml --- ml
        T4 DNA ligase (400 u/ml) 0.2 ml 0.2 ml
        Total 5.2 ml 4.2 ml
         

        incubate for 2-3 h (or ovn) at 14℃.

        proceed with the transformation of the appropriate E. coli strain .

        Solutions:

        10x Ligation Buffer:

        0.5 M Tris-HCl pH 7.8, 50 mM MgCl2 , 0.1 M b-mercaptoethanol, 50 mM ATP, 5 mg/ml BSA

         
        Ligation Buffer (10x)
         
         
        1 M Tris-HCl pH 7.8 500.0 ml
        1 M MgCl2 50.0 ml
        b-mercaptoethanol 7.0 ml
        100 mM ATP 50.0 ml
        0.1 g/ml BSA 50.0 ml
        H2 O 343.0 ml
        Total 1 ml
         


        Remarks:

        As usually when pipetting enzyme reactions keep the tubes on ice during all manipulations. Cip-treat a digested vector cut with only a single enzyme. If the vector was double-digested: phenolize prior to ligating. Use equimolar amounts of vector and insert. As a rule we use 50 ng vector (3 kb) and 50 ng insert (3 kb). More values are given in the table below. Recalculate accordingly when using different-length vectors. Don't use less than 8 ng or so for fragments smaller than 0.5 kb. In the case of small fragments circularization occurs and removes the F from the rxn.
         

        F Used in Standard Ligation
         
        vector (50 ng, 3kb)
        Length of F
        (kb)
        Amount of F (ng)
        0.5 8.3
        1 16.7
        1.5 25
        2 33.3
        2.5 41.7
        3 50
        3.5 58
        4 66.7
        5 83.3
        6 100
        7 116.3
         


        Materials:

        Reagent/Tool Supplier Cat.-#
         
        BSA    
        ATP    
        T4 DNA Ligase    

         

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