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Cloning of Potassium Channel Splice Variants from Tissues and Cells

Potassium channels display considerable functional diversity. Alternative pre-mRNA splicing represents one of the most powerful post-transcriptional mechanisms to create physiological diversity by generating multiple protein products from a single gene. Due to the mod ...

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Investigation of KATP Channel Endocytosis by Immunofluorescence

Macroscopic ion channel currents (1) are a product of the channel open probability (Po), the single channel current (i) and the number of channels present on the cell surface (N) at any given time (I = PoiN). Intra-cellular trafficking pathways are proving to be of vital importance in regulating ion cha ...

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Investigation of KATP Channel Endocytosis and Cell Surface Density by Biotinylation and Western Blotting

Macroscopic ion channel currents (I) are a product of the channel open probability (Po), the single channel current (i) and the number of channels present on the cell surface (N) at any given time (I = PoiN). Endocytosis has been shown to be one of the key determinants of cell surface channel density and defec ...

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Lipid Microdomains and K+ Channel Compartmentation: Detergent and Non-Detergent-Based Methods for the Isolation and Characterisation of Cholesterol-En

The traditional view of the plasma membrane as a uniform cellular envelope formed from a homogenous mixture of lipids has been refined in recent years to reflect the heterogeneity of its composite lipids. The membrane can consist of upwards of 500 different types of lipids, which exhibit complex ...

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Determination of Phosphoinositide Binding to K+ Channel Subunits Using a ProteinLipid Overlay Assay

Phosphoinositides are an important component of the cell as they have a variety of roles that include cytoskeleton regulation, generation of second messengers, endosome trafficking, membrane transport and regulation of ion channels. The direct interaction between phosphatid ...

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Protein Complex Analysis of Native Brain Potassium Channels by Proteomics

TREK potassium channels belong to a family of channel subunits with two-pore domains (K2P). TREK1 knockout mice display impaired polyunsaturated fatty acid-mediated protection against brain ischemia, reduced sensitivity to volatile anesthetics, resistance to depression a ...

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Xenopus Oocytes as a Heterologous Expression System for Studying Ion Channels with the Patch-Clamp Technique

Oocytes from the Xenopus laevis represent one of the most widely used expression systems for functional characterization of ion channels. Their large size facilitates both injection of heterologous cRNA and subsequent electrophysiological recordings of ion channel currents. ...

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The Design and Application of Ribosomal RNA-Targeted, Fluorescent Oligonucleotide Probes for the Identification of Endosymbionts in Protozoa

Species identification in microbiology has long been hampered by the limits of pure culture techniques. This is most evident in cases where morphologically conspicuous microorganisms have so far resisted all attempts of enrichment and cultivation like for many of the numerous endos ...

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Subtraction Hybridization for the Isolation of Strain-Specific Rhizobium DNA Probes

The principle of subtraction hybridization protocols is the removal from one cell type of nucleic acid sequences that are shared with other cell types (sources of subtracter sequences), to leave only sequences unique to the cell type or organism in question. Subtracter sequences may be from o ...

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Recording the Activity of ATP-Sensitive K+ Channels in Open-Cell Cell-Attached Configuration

The functional activity of ion channels is affected by their local environment, and for certain types of channels this local effect is critical. This chapter describes a method of recording the activity of ATP-sensitive K+ channels, expressed on the plasma membrane of pancreatic β-cells, wi ...

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Planar Patch Clamp: Advances in Electrophysiology

Ion channels have gained increased interest as therapeutic targets over recent years, since a growing number of human and animal diseases have been attributed to defects in ion channel function. Potassium channels are the largest and most diverse family of ion channels. Pharmaceutical a ...

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Analysing Steroid Modulation of BKCa Channels Reconstituted into Planar Lipid Bilayers

A number of recent studies have described the activation of BKCa channels by steroid hormones such as estrogen. The proposed mechanisms are diverse and include both the direct interaction with the ion channel subunits and the stimulation via receptor activation and cell signalling path ...

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Using Bioluminescence Resonance Energy Transfer to Measure Ion Channel Assembly

Bioluminescence Resonance Energy Transfer (BRET) measures protein interactions within 10 nm of each other. Aside from its ability to probe for interactions at high resolution, this technique operates in live, intact cells, and offers a high throughput method of detection. Thus far, BRET h ...

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The Use of FRET Microscopy to Elucidate Steady State Channel Conformational Rearrangements and G Protein Interaction with the GIRK Channels

while X-ray crystallography provides extremely high-resolution snapshot of protein structure, it lacks the ability to provide dynamic information on the processes involving conformational rearrangements of the protein. Methods to record protein conformational dynami ...

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The Voltage-Clamp Fluorometry Technique

Ion channels are the cell's gatekeepers. These proteins selectively allow ionic current to flow down its electrochemical gradient. In some cases, specialized chemical or voltage sensing domains respond to environmental changes and signal the cell to adjust its internal chemistry in r ...

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Modulation of Potassium Ion Channel Proteins Utilising Antibodies

The application of antibodies to living cells has the potential to modulate the function of specific proteins by virtue of their high specificity. This specificity has proven effective in determining the involvement of many proteins in neuronal function where specific agonists and an ...

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Identification of Mutations in the Kir6.2 Subunit of the KATP Channel

The beta-cell ATP-sensitive potassium channel is a key component of stimulus —secretion coupling in the pancreatic beta-cell. The channel consists of four subunits of the inwardly rectifying potassium channel Kir6.2 and four subunits of the sulfonylurea receptor 1. Loss of function mu ...

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Fluorescence-Based Tl+Influx Assays as a Novel Approach for Characterization of Small-Conductance Ca2+Activated K+ Channel Modulators

Small-conductance Ca2+−activated potassium (SK) channels constitute a family of ion channels that are regulated by the cytosolic Ca2+ concentration. Increases in the intracellular Ca2+ concentration (i) result in opening of the channels, which in turn will lead to changes in the membra ...

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Recording hERG Potassium Currents and Assessing the Effects of Compounds Using the Whole-Cell Patch-Clamp Technique

The complex gating of the hERG channel makes it ideally suited to its principal role in controlling phase 3 repolarization of the cardiac ventricular action potential. Any abnormal delay in repolarization can lead to the re-activation of Ca2+ channels, giving rise to early after-depolari ...

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Rubidium Efflux as a Tool for the Pharmacological Characterisation of Compounds with BK Channel Opening Properties

This chapter describes a method of assaying rubidium (Rb+) efflux as a measure of potassium channel activity. In this assay, rubidium acts as a tracer for potassium movement across the cell membrane. HEK 293 cells expressing the alpha subunit of the human brain large-conductance, voltage-act ...

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