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HLA DR-DQ Genotyping by Capillary Electrophoresis for Risk Assessment for Celiac Disease

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The risk for celiac disease (CD) is clearly related to specific HLA DQA1 and DQB1 alleles, but HLA �typing is often considered too costly for frequent use.
Here we present a method using sequence-specific primed PCR (PCR-SSP) for HLA-DR-DQ genotyping optimized for capillary electrophoresis on Applied Biosystems 3130xl Genetic Analyzer. Requiring a total of three PCR reactions and a single electrophoretic step, this method reduces the reagent expenses and technical time for directed HLA typing to distinguish risk alleles for CD, with a sufficient throughput for large-scale screening projects.
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