NK-cell cytotoxicity assay

To measure NK cell killing, suitable target cells are labeled with ⁵¹ Cr, washed and incubated together with the killer cells (and treatments). Large amounts of label is released into the supernatant upon disruption of membrane integrity by the killing process and can be measured in a gamma-counter.

• 37°C waterbath (with lead container for 50 ml tube to shield gamma radiation, within a plastic container to prevent lead contamination of the waterbath)
• 50 ml tubes
• round bottom 96-well plates
• centrifuge for 50 ml tubes and 96-well plates
• wet ice

• ⁵¹ Cr (sodium chromate in sterile solution, NEZ #030S, DuPont NEN, Wilmington, DE), 1 µCi / µl
• R10 media (= RPMI 1640 + 10% FBS)
• PBS + 2% EDTA
• Triton X-100 solution (10% in dH₂ O)

The mouse NK-cell line KY1 is used as an effector cell. During recovery (e.g. after freezing), these cells require 1000 U/ml IL-2 and a gradually weaned to 50 U/ml IL-2. The evening before the assay (day -1 ), passage the cells from 50 U/ml IL-2 into the desired level of IL-2 for overnight (16h) stimulation. Occasionally, IL-2 levels > 50 U/ml are necessary to maintain killing activity of KY1 cells.

YAC-1 cells are the optimal target for mouse NK cells (KY1). They grow very fast and need to be passaged every other day. Only cells with high viability (>95% in the trypan blue test) should be used. Otherwise, spontaneous release of label will be high and determination of specific killing will be difficult. Passage on day -1 . Seed 2 x 10⁶ cells per flask (20 ml).

1. Harvest target cells. Gentle handling will assure low background.
2. Count and estimate viability (trypan blue test).
3. Adjust cell concentration to 10⁷ cells/ml R10 media in a 50 ml tube. .
4. Transfer the required volume (will need ~ 200 µl cell suspension per 96-well plate) into fresh 50 ml tube. The remaining steps use radioactivity , obey safety standards. Think ahead, to cut down exposure time . Maximize distance and use lead shielding .
5. Add 50 µl (= 50 µCi) ⁵¹ Cr per 200 µl cell suspension. Standard setup would be: 1 ml cell suspension + 250 µl (= 250 µCi) ⁵¹ Cr.
6. Incubate in at 37°C for 1 h (water in a lead container in a plastic container in a waterbath). Swirl gently every 15 min.
7. Spin at 1000 rpm for 5 min, remove supernatant.
8. Resuspend in 40 ml prewarmed R10 media, incubate again 1 hour at 37°C with repeated gentle swirling. This allows the removal of the initially high rate of spontaneous leakage and will further minimize background.
9. Prepare treatments in 100 µl volume, store on ice. Label 96-well plate.
10. Harvest effector cells using PBS + 2% EDTA, count . Will need > 10 x 10⁶ effector cells. Standard setup: 50 µl effector (2 x 10⁵ cells for E:T 20:1), 50 µl target (1 x 10⁴ cells), 100 µl treatment.

    E:T	E / 50 µl	T / 50 µl	E / ml
    1:1	1 x 104	104	2 x 105
    10:1	1 x 105	104	2 x 106
    20:1	2 x 10 5	10 4	4 x 10 6
    50:1	5 x 105	104	1 x 107
    100:1	1 x 106	104	2 x 107
    200:1	2 x 106	104	4 x 107

11. Adjust effector cell concentration
    • to 4 x 10⁶ cells / ml (for commonly used E:T of 20:1), aliquot 50 µl into each well (triplicates),
12. After 1 hour incubation, spin target cells at 1000 rpm for 5 min. Decant supernatant, resuspend in 40 ml R10 media. Spin again and resuspend in 50 x the original cell suspension volume (i.e. in 10 ml for 200 µl cell initial suspension volume), thereby adjusting the concentration to 10⁴ /50µl. Commonly 5,000 to 50,000 target cells / well are used.
13. Aliquot 50 µl to NK cells in 96-well plates.
14. Add 100 µl treatment .
15. As a negative control (spontaneous release of label) aliquot 3 x 50 µl target cells into 96-well plate. Add 150 µl R10 media.
16. As a positive control (maximal release of label upon detergent or freeze/thaw lysis) aliquot 3 x 50 µl target cells into 96-well plate. Add 130 µl R10 media (keep safe distance to other samples to avoid spilling detergent bubbles to other wells; best on separate plate).
17. Label plates as being radioactive, incubate at 37°C for 4 hours in 5% CO₂ incubator. Longer incubation may occasionally be used, but natural killing should be completed within 4 hours and longer incubation may involve processes other than spontaneous killing (e.g. antibody-mediated cytotoxicity).
18. After the incubation, add 20 µl 10% Triton X-100 to each positive control. Pipet up and down to achieve complete lysis.
19. Spin 96-well plates at 500 g for 5 minutes.
20. Carefully pipet 100 µl of the supernatant into individual tubes. Avoid disturbing the cell pellet, because harvesting of intact targets will erroneously indicate a higher level of killing.
21. Count individual tubes in gamma counter. Expected range is between 1,000 - 10,000 cpm for positive control, 100 -2,000 cpm (10-20%) spontaneous release for negative control.
22. Calculate specific cytotoxicity (expected rate for KY1/YAC-1 is ~ 50%):
    

    % specific cytotoxicity = 100 x (exp - spont) / (max - spont)