【共享】匹兹堡大学教程：DNA序列分析
丁香园论坛
2024
美国匹兹堡大学的DNA序列分析课程，包括引物设计、酶切等过程的生物信息学分析。
Data Analysis Tools
QuEST - ChIP-seq data analysis package
HOMER - Hypergeometric Optimization of Motif Enrichment -- ChIP-seq and Motif Discovery
Bowtie - An ultrafast memory-efficient short read aligner
Tophat - A spliced read mapper for RNA-Seq
Cufflinks - Transcript assembly, differential expression, and differential regulation for RNA-Seq
UCSC Genome BrowserEnsembl Genome BrowserCEAS - Cis Regulatory Element Annotation System - ChIP-chip peak data mining
Primer-BLAST - primer designing tool for qPCR and qRT-PCR
Recombineering - Bacterial Recombination System
DAVID - Database for Annotation, Visulatization and Integrated Discovery - Gene annotation
ConSite - Trascription factor binding site search
SOLiD Next Gen Sequencer
SOLiD Software Support
SEQanswers -- Forum for next gen sequencing users
Data Analysis Tools
QuEST - ChIP-seq data analysis package
HOMER - Hypergeometric Optimization of Motif Enrichment -- ChIP-seq and Motif Discovery
Bowtie - An ultrafast memory-efficient short read aligner
Tophat - A spliced read mapper for RNA-Seq
Cufflinks - Transcript assembly, differential expression, and differential regulation for RNA-Seq
UCSC Genome BrowserEnsembl Genome BrowserCEAS - Cis Regulatory Element Annotation System - ChIP-chip peak data mining
Primer-BLAST - primer designing tool for qPCR and qRT-PCR
Recombineering - Bacterial Recombination System
DAVID - Database for Annotation, Visulatization and Integrated Discovery - Gene annotation
ConSite - Trascription factor binding site search
SOLiD Next Gen Sequencer
SOLiD Software Support
SEQanswers -- Forum for next gen sequencing users
