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疾病及处理

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Site-Directed Mutagenesis by Inverse PCR

Site-directed mutagenesis has revolutionized the study of protein structure and function by enabling the controlled and systematic production of mutant proteins. Early methods of site-directed mutagenesis involved the use of a mutated oligonucleotide primer to prime synthe ...

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Transposon and Transposome Mutagenesis of Plasmids, Cosmids, and BACs

Transposons are mobile genetic elements with the capacity to “jump” to new target DNA. Although first discovered in Zea mays by McClintock (1), they are present in DNA genomes of species from all kingdoms. Transposons fall into two major classes. Class I transposons are retroelements that trans ...

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Creating Nested DNA Deletions Using Exonuclease III

DNA fragments cloned into plasmids are frequently greater than 500 base pairs in length and thus may be too long to sequence from a single primer-binding site in the vector. An efficient way to sequence such large DNA inserts is to generate a nested set of deletions in the target DNA, effectively moving the ...

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Vectors for the Expression of Recombinant Proteins in E. coli

Escherichia coli is the most commonly used and best characterized organism for overexpressing foreign and nonforeign proteins. The use of E. coli confers several immediate advantages to the user: rapid and high-level expression as a result of the speed of cell growth to high density; low compl ...

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Expression of Recombinant Proteins From lac Promoters

The Gram-negative bacterium Escherichia coli enjoys widespread use in modern biology as both a model organism and a microbiological tool. One of the keys to its popularity lies in the functionality of the lac operon. This regulated E. coli operon has been manipulated and utilized in diverse and cr ...

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Choosing a Cloning Vector

Since the construction of the first generation of general cloning vectors in the early 1970s, the number of plasmids created has increased to an almost countless number. Thus, a critical decision facing today’s investigator is that of which plasmid to use in a particular project? Despite the bew ...

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Plasmid-Based Reporter Genes: Assays for -Galactosidase and Alkaline Phosphatase Activities

Reporter genes encode easily measurable traits. Most commonly, they are used to investigate the expression of other genes for which functional assays are not available or for which measurement of expressed product is difficult. This is often done through constructing a genetic fusion in w ...

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Plasmid-Based Reporter Genes: Assays for Green Fluorescent Protein

Green fluorescent protein (GFP) of the jellyfish Aqueorea victoria is a 238-amino-acid, 28-kDa protein that absorbs light with an excitation maximum of 395 nm and fluoresces with an emission maximum of 509 nm (1). GFP owes its unique spectral properties to its chromophore (2) that consists of a Ser6 ...

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Escherichia coli Host Strains

To successfully perform molecular genetic techniques it is essential to have a full understanding of the properties of the various Escherichia coli host strains commonly used for the propagation and manipulation of recombinant DNA. E. coli is an enteric rod-shaped Gram-negative bacte ...

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Electroporation of E. coli

Electroporation, originally developed as a method to introduce DNA into eukaryotic cells (1), has subsequently been extensively used for bacterial transformation (2,3). This procedure is an effective method for the transfer of DNA to a wide range of Gram-negative bacteria, such as Escher ...

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Chemical Transformation of E. coli

Transformation is defined as the transfer of genetic information into a recipient bacterium using naked DNA, without any requirement for contact with a donor bacterium. The ability to transform or accept exogenous DNA is generally referred to as competence, although the term has been so wid ...

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DNA Transfer by Bacterial Conjugation

Bacterial conjugation is defined as contact-dependent transmission of genetic information from a donor bacterium to a recipient cell (1). Transfer of DNA by conjugation is often termed lateral or horizontal gene transfer, as opposed to vertical transfer by which genetic information is ...

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Cosmid Packaging and Infection of E. coli

Cosmids are cloning vectors that were developed to enable large fragments of DNA to be cloned and maintained (1–3). Cosmid vectors allow the cloning of fragments up to 45 kilobases (kb) and are commonly used in genomic library construction. The distinguishing feature of a cosmid is the presence of b ...

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Isolation of Plasmids from E. coli by Alkaline Lysis

Purification of plasmid DNA from Escherichia coli using alkaline lysis (1,2) is based on the differential denaturation of chromosomal and plasmid DNA in order to separate the two. Bacteria are lysed with a solution containing sodium dodecyl sulfate (SDS) and sodium hydroxide. During this s ...

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Isolation of Plasmids from E. coli by Boiling Lysis

The boiling lysis procedure (1) is quick to perform and, therefore, especially suitable for screening large numbers of small-volume Escherichia coli cultures. It is described with different adaptations in a variety of protocol books (2,3). The quality of the isolated plasmid DNA is lower than ...

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Vector Incrimination and Entomological Inoculation Rates

This chapter provides standard methods for the incrimination of Anopheles mosquito species serving as malaria vectors and associated methods for measuring the intensity of transmission. In any malaria-endemic area, one or more species of Anopheles mosquitoes serve as malaria vec ...

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Multi-Locus Sequence Typing

It has recently become apparent that many bacterial populations undergo extremely high levels of horizontal genetic exchange, such that traditional clonal models of bacterial diversity are now inadequate (1–3). Such recombination is especially apparent in naturally transfor ...

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Nucleotide Sequencing of Antigen Genes of Neisseria meningitidis

The cell-surface structures of Neisseria meningitidis play a critical role in the interaction of the bacterium with the human host both as variable antigens that evade immune eradication and by promoting colonization of and adherence to epithelial cells in the nasopharynx. Surface mol ...

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Capsular Operons

The major factor determining the different pathogenicities of meningococci and their close relatives, the gonococci, is the polysaccharide capsule. The capsule protects meningococci from complement attack and phagocytosis and is indispensable for systemic spread of the bac ...

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Molecular Analysis of the Meningococcal LPS Expression

Lipopolysaccharide (LPS) is one of the major virulence factors of Neisseria meningitidis (1), with proposed roles in bacterial attachment to the host, invasion of host tissues, serum resistance, evasion of the host immune response, and the pathogenesis of sepsis syndrome. Accordingly it ...

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