DNA测序

Miniprep of BAC DNA 1.Inoculate 4 - 8 tubes of 3ml/tube LB with 15μg/ml chloramphenicol with BAC clone and grow oveernight. Miniprep with AutoGen 740 according to the protocol described in our Web ...

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序列测定的技术和策略 Sanger双脱氧链终止法 Maxam－Gilbert DNA 化学降解法 测序策略 目前应用的两种快速序列测定技术是Sanger等（1977）提出的酶法及Maxam和Gilbert(1977)提出的化学降解法。虽然其原理大相径庭，但这两种方法都是同样生成互相独立的若干组带放射性标记的寡核苷酸，每组寡核苷酸都有固定的起点，但却随机终止于特定的一种或者多种残基上。由于DNA 上 ...

在分子生物学研究中，DNA 的序列分析是进一步研究和改造目的基因的基础。目前用于测序的技术主要有Sanger等（1977）发明的双脱氧链末端终止法和Maxam和 Gilbert（1977）发明的化学降解法。这二种方法在原理上差异很大，但都是根据核苷酸在某一固定的点开始，随机在某一个特定的碱基处终止，产生A，T，C，G四组不同长度的一系列核苷酸，然后在尿素变性的PAGE胶上电泳进行检测，从而获得DN ...

Pouring the Gel Outline: Pouring this big & thin 6% acrylamide gel ("Mother of all gels") is quite a challenge and probably the reason why smart whimps by them ready to use. Supplies & ...

I have been using an alternative to wedge gels that saves acrylamide, cuts gel drying time to 20 min and gives as good or better band squashing at the bottom of the gel. It was published in BioTechniques about 3 or 4 years ago (email me if you want the reference). The method goes as such: Run the gel with 0.5X TBE in the top tank and normal 1 X TBE in the bottom tank. Just after the last (or in the case of one load - the only) load has run into the gel, put a half volume of 3 M sodium acetate in

16 µl BigDye Terminator Ready Reaction Mix 1 µg BAC DNA (determined from gel) 10 pmol primer water to 40 µl Heat tubes at 95℃ for 5 min., then perform 30 cycles of: 95℃ x 30 sec 55℃ x 10 sec 60℃ x 4 min Run BACs on a 377 and load the entire sample after clean up. If you use a 3700, the loading would be very different. This IS the double recipe. Normally a reaction is only 20 µl. For sequencing we use ABIs "BigDye Terminator Cycle Sequencing Ready Reaction Kits v2.0 with AmpliTaq DNA Polymerase",

Bst DNA polymerase-catalyzed radiolabeled two-step sequencing reactions (26) are modified from those presented earlier (25) by altering the absolute amounts and the relative deoxy/dideoxynucleotide ra ...

For every 4 mls of culture, dissolve the BAC DNA pellet in 40 µl of water. for example: Usually each BAC is grown in 20 mls LB/CM total, then is dispensed into one Autogen tube (4 mls in each of the 5 tubes). After miniprep, add 40 µl of water to each tube (200 µl total for each BAC). Vortex the Autogen tube and let sit for at least 0.5 hour. Then pool the 5 samples into one for each BAC. check the BAC DNA for quality and quantity by digesting 5 µl of the DNA in a 20 µl reaction: 5.0 µl DNA 2.0

This is a rapid method for chemical DNA sequencing which is commonly used as ladder for footprinting reactions or for sequencing of short DNA oligonucleotides. Reference: Bencini et al. (1984) Biotechniques 2: 4-5. Steve Hahn/Hahn Lab The method below works well for Sequencing of DNA of greater than ~40 bp. Typically, about 150 bases of sequence can be read from analysis on a 6-8% urea acrylamide gel. For sequencing of short oligonucleotides, the reaction times should be increased as noted below

Pyrosequencing是对短到中等长度的DNA序列样品进行高通量的、精确和重复性好的分析的技术。 第一步 ――测序引物和PCR扩增的、单链的DNA模板杂交，与酶―DNA聚合酶（DNA polymerase）、ATP硫酸化酶（ATP sulfurylase）、荧光素酶（luciferase）、三磷酸腺苷双磷酸酶（apyrase）―和底物―adenosine 5´ phosphosu ...

测定DNA 的核苷酸序列是分析基因结构与功能关系的前提。从小片段重叠法到加减法、双脱氧链终止法、化学降解法、自动测序，DNA 测序技术发展很快。目前在实验室手工测序常用Sanger双脱氧链终止法。Sanger法就是使用DNA 聚合酶和双脱氧链终止物测定DNA 核苷酸序列的方法。它要求使用一种单链的DNA 模板或经变性的双链DNA 模板和一种恰当的DNA 合成引物。其基本原理是DNA 聚合酶利用单链的DNA 模板，合成出准确互补链，在合成时，某种dNTP换成了ddNTP，这时，DNA 聚合酶利用2’，3’-双脱氧核苷三磷酸作底物，使之掺入到寡核苷酸链的3’末端，导致3’末端无3＇-OH，从而终止DNA 链的生长，双脱氧核苷酸的种类不同，掺入的位置不同就造成了在不同的专一位置终止的长度不同的互补链。通过掺入放射性核苷酸和聚丙烯酰胺凝胶电泳，即可读出模板DNA 的互补链序列。 一、 试剂准备 1.硅化液：四氯化碳250ml，二氯二甲基硅烷25ml。 2.6%变性PAGE胶的配制：丙烯酰胺 28.5g，N，N’-亚甲基双丙烯酰胺1.5g，10×TBE 50ml，尿素210g，加ddH2O至50

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