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Synthesis of Peptide‐Oligonucleotide Conjugates by Diels‐Alder Cycloaddition in Water

Abstract Table of Contents Materials Figures Literature Cited Abstract Peptide?oligonucleotide conjugates incorporating all the nucleobases and trifunctional amino acids are obtained by Diels?Alder reacti

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Visualization of RNA Using Fluorescence Complementation Triggered by Aptamer‐Protein Interactions (RFAP) in Live Bacterial Cells

Abstract Table of Contents Materials Figures Literature Cited Abstract This unit describes a method allowing RNA visualization in live cells. The method is based on fluorescent protein complementation reg

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Utilizing Peptide SPOT Arrays to Identify Protein Interactions

Abstract Table of Contents Materials Figures Literature Cited Abstract SPOT arrays consist of synthesized peptides 12? to 18?amino acids long, with overlapping sequences that cover the entire sequence of

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Synthesis of a 4‐Selenothymidine Phosphoramidite and Incorporation into Oligonucleotides

Abstract Table of Contents Materials Figures Literature Cited Abstract The detailed synthetic protocol for a 4?selenothymidine phosphoramidite and its use to prepare modified oligonucleotides is described

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From In Vitro to In Vivo: Imaging from the Single Cell to the Whole Organism

Abstract Table of Contents Materials Figures Literature Cited Abstract This unit addresses the applications of fluorescence microscopy and quantitative imaging to study multiple physiological variables of

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Membrane‐Based Yeast Two‐Hybrid System to Detect Protein Interactions

Abstract Table of Contents Materials Figures Literature Cited Abstract The classical yeast two?hybrid system and its modifications have been successfully used over the past decade to investigate interacti

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Searching the MINT Database for Protein Interaction Information

Abstract Table of Contents Figures Literature Cited Abstract The Molecular Interactions Database (MINT) is a relational database designed to store information about protein interactions. Expert curators extract the relevant information fro

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Prediction of Protein‐Protein Interaction Networks

Abstract Table of Contents Figures Literature Cited Abstract This unit offers a general overview of several techniques that have been developed for inferring functional and/or protein?protein interaction networks. The majority of these use

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Use of Spectral Fluorescence Resonance Energy Transfer to Detect Nitric Oxide‐Based Signaling Events in Isolated Perfused Lung

Abstract Table of Contents Materials Figures Literature Cited Abstract Fluorescence resonance energy transfer (FRET) is a fluorescence microscopy technique suitable for live cells and capable of detecting

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RNA Intramolecular Dynamics by Single‐Molecule FRET

Abstract Table of Contents Materials Figures Literature Cited Abstract Investigation of single RNA molecules using fluorescence resonance energy transfer (FRET) is a powerful approach to investigate dynam

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Labeling DNA and Preparing Probes

Abstract Table of Contents Materials Figures Literature Cited Abstract Labeling nucleic acids with radioisotopes, fluorophores, biotin, or digoxigenin enables their detection and analysis. When designing

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Detection and Analysis of Protein‐Protein Interactions of Organellar and Prokaryotic Proteomes by Blue Native and Colorless Native Gel Electrophoresis

Abstract Table of Contents Materials Figures Literature Cited Abstract Native gels enable the analysis of protein complexes on a proteome?wide scale in a single experiment. The proto

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Synthesis of Alkyne‐ and Azide‐Modified Oligonucleotides and Their Cyclization by the CuAAC (Click) Reaction

Abstract Table of Contents Materials Figures Literature Cited Abstract The Cu(I)?catalyzed alkyne?azide cycloaddition (CuAAC) reaction has been used to synthesize cyclic mini?DNA duplexes. The reaction is

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Release of DNA Oligonucleotides and Their Conjugates from Controlled‐Pore Glass Under Thermolytic Conditions

Abstract Table of Contents Materials Figures Literature Cited Abstract The sequential functionalization of long?chain alkylamine controlled?pore glass (CPG) with a 3?hydroxypropyl?(2?cyanoethyl)thiophosphor

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Imaging Protein‐Protein Interactions by Förster Resonance Energy Transfer (FRET) Microscopy in Live Cells

Abstract Table of Contents Materials Figures Literature Cited Abstract This unit describes an acceptor?sensitized emission FRET method using a confocal microscope for image acquisition. In contrast to acc

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Two‐Hybrid Dual Bait System

Abstract Table of Contents Materials Figures Literature Cited Abstract The yeast two?hybrid system, or interaction trap, is one of the most versatile methods available with which to identify and establish

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Measurement of Oxygen Radicals and Lipid Peroxidation in Neural Tissues

Abstract Table of Contents Materials Figures Literature Cited Abstract One of the most completely validated processes involved in secondary tissue damage following acute brain or spinal cord injury and in

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Strep/FLAG Tandem Affinity Purification (SF‐TAP) to Study Protein Interactions

Abstract Table of Contents Materials Figures Literature Cited Abstract In recent years, several methods have been developed to analyze protein?protein interactions under native conditions. One of them, ta

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Metabolic Radiolabeling of Animal Cell Glycoconjugates

Abstract Table of Contents Materials Figures Literature Cited Abstract Useful information about glycoconjugates can be obtained by labeling their aglycone (noncarbohydrate) portions?e.g., labeling protein

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Nucleoside Modification with Boron Clusters and Their Metal Complexes

Abstract Table of Contents Materials Figures Literature Cited Abstract General methods for the synthesis of nucleosides modified with borane clusters and metallacarborane complexes are presented. These in

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