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Basics of Digital Microscopy

Abstract Table of Contents Figures Literature Cited Abstract Digital microscopy combines the equipment of classic light microscopy with a computerized imaging system, i.e., a digital camera. This technique comprises image formation by opti

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Spectroscopic Methods for the Determination of Protein Interactions

Abstract Table of Contents Materials Figures Literature Cited Abstract This unit provides guidelines on how to use steady?state fluorescence spectroscopy for the quantification of protein?protein interact

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Functional Characterization of Proteins Regulating Actin Assembly

Abstract Table of Contents Materials Figures Literature Cited Abstract A very large, ever?increasing repertoire of actin?binding proteins regulates the assembly dynamics and the spatial organization of ac

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Analysis of Protein Co‐Occupancy by Quantitative Sequential Chromatin Immunoprecipitation

Abstract Table of Contents Materials Figures Literature Cited Abstract Sequential Chromatin Immunoprecipitation (SeqChIP) is a powerful technique for analyzing the simultaneous association of two differen

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Three‐Dimensional Visualization of Blood and Lymphatic Vasculature in Tissue Whole Mounts Using Confocal Microscopy

Abstract Table of Contents Materials Literature Cited Abstract Two vascular systems, cardiovascular and lymphatic, maintain appropriate interstitial and intravascular fluid volume in the body. Each is endowed with innate physiologic respon

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Application of Amide Proton Exchange Mass Spectrometry for the Study of Protein‐Protein Interactions

Abstract Table of Contents Materials Figures Literature Cited Abstract This protocol describes amide proton exchange experiments that probe for changes in solvent accessibility at protein?protein interfac

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An Aminooxy‐Functionalized Non‐Nucleosidic Phosphoramidite for the Construction of Multiantennary Oligonucleotide Glycoconjugates on a Solid Support

Abstract Table of Contents Materials Figures Literature Cited Abstract In this unit, a method is described that allows construction of multiantennary oligonucleotide glycoconjugates on a solid support. A

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Synthesis and Properties of 7‐Substituted 7‐Deazapurine (Pyrrolo[2,3‐d]pyrimidine) 2′‐Deoxyribonucleosides

Abstract Table of Contents Materials Figures Literature Cited Abstract 7?Substituted 7?deazapurine (pyrrolopyrimidine) 2??deoxyribonucleosides are synthesized by stereoselective nucleobase anion glycosylati

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Quantitative Fluorescence In Situ Hybridization (QFISH) of Telomere Lengths in Tissue and Cells

Abstract Table of Contents Materials Figures Literature Cited Abstract Telomeres are repetitive DNA sequences at the end of each chromosome that provide stability and prevent end?to?end chromosome fusions

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A Homogeneous Assay to Assess GABA Transporter Activity

Abstract Table of Contents Materials Figures Literature Cited Abstract This unit describes a convenient functional uptake assay for GABA transport into cell lines transiently transfected with GABA transpo

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Synthesis of Covalent Oligonucleotide‐Streptavidin Conjugates and Their Application in DNA‐Directed Immobilization (DDI) of Proteins

Abstract Table of Contents Materials Figures Literature Cited Abstract Semisynthetic DNA?streptavidin conjugates are synthesized by covalent coupling of thiol?modified DNA oligonucleotides and streptavidi

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Identifying Chromosomal Targets of DNA‐Binding Proteins by Sequence Tag Analysis of Genomic Enrichment (STAGE)

Abstract Table of Contents Materials Figures Literature Cited Abstract Sequence Tag Analysis of Genomic Enrichment (STAGE) is a method for experimentally identifying the in vivo chromosomal targets of DNA

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Use of Microsphere‐Supported Phospholipid Membranes for Analysis of Protein‐Lipid Interactions

Abstract Table of Contents Materials Literature Cited Abstract Many proteins bind to phospholipid membranes in order to gain or modify function. As an example, blood coagulation proteins must bind to phosphatidylserine?containing membranes

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Microsphere Surface Protein Determination Using Flow Cytometry

Abstract Table of Contents Materials Figures Literature Cited Abstract This unit describes an extrinsic staining protocol using the amine?reactive CBQCA dye to measure the amount of protein on the surface

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Characterization of Nuclear Receptor Ligands by Multiplexed Peptide Interactions

Abstract Table of Contents Materials Figures Literature Cited Abstract This unit describes a method to evaluate the effect that small molecules have on the binding interactions of a nuclear receptor prote

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Receptors as Drug Targets

Abstract Table of Contents Figures Literature Cited Abstract Receptors, located on both the cell surface and within the cell, are the molecular targets through which drugs produce their beneficial effects in various disease states. Recepto

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Disulfide Conjugation of Peptides to Oligonucleotides and Their Analogs

Abstract Table of Contents Materials Figures Literature Cited Abstract Peptide conjugation of oligonucleotides and their analogs is being studied widely towards improving the delivery of oligonucleotides

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Mapping Chromatin Interactions by Chromosome Conformation Capture

Abstract Table of Contents Materials Figures Literature Cited Abstract Chromosome conformation capture (3C) is one of the only techniques that allows for analysis of an intermediate level of chromosome st

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Practical Aspects of Radioligand Binding

Abstract Table of Contents Figures Literature Cited Abstract Radioligand binding has been used for many years to identify new binding sites, characterize receptors, and identify novel ligands. Although various techniques have been develope

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Methoxyoxalamido Chemistry in the Synthesis of Tethered Phosphoramidites and Functionalized Oligonucleotides

Abstract Table of Contents Materials Figures Literature Cited Abstract A general approach to phosphoramidites tethered with single and multiple linkers through the use of methoxyoxalamido (MOX) chemistry

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