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AFLP Fingerprinting of Arabidopsis

AFLP− (KeyGene, Wagenmgen, The Netherlands), is a DNA fingerprmtmg technique that visualizes DNA restriction fragments by polymerase chain reaction (PCR) amphfication (1,2). Routinely, 50-100 restriction fragments are amphfied simultaneously and detected on denaturing po ...

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Building a High-Density Genetic Map Using the AFLP Technology

The AFLP− (Keygene, Wageningen, The Netherlands) technology allows the simultaneous amplification of many restriction fragments in a single polymerase chain reaction (PCR). Thus, the technology can be used to very efficiently detect restriction fragment polymorphisms. As an exa ...

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Use of Cleaved Amplified Polymorphic Sequences (CAPS) as Genetic Markers in Arabidopsis thahna

Plant genetic maps can be constructed either wrth phenotyprc or molecular markers. Historically, genetic mapping utrlrzed vtsrble markers, but it is difficult to examme many such markers m a single cross. The recognmon that distantly related individuals differ m DNA sequence througho ...

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Mapping Mutations with ARMS

Except the fact that part of T-DNA- or transposon-induced mutations can be directly identified via the T-DNA or transposon tag (see Chapters 32–34) non-tagged mutations and mutations induced by chemicals or radiation need to be mapped to chromosomal regions as a first step towards their furth ...

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In Vivo Footprinting in Arabidopsis

In vrvo footprintmg is a method of observmg DNA/protein mteractions of a gene within the context of the livmg cell. In other words, in vivo footprintmg provides an opportunity to observe conformational changes in chromatm associated with the transcriptional machinery of a cell as it responds ...

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Transgenic Plants: An Historical Perspective

The development of technologies that allow the introduction and functional expression of foreign genes in plant cells has extended in less than two decades to the production of transgenic plants with improved insect and disease resistance, seeds and fruits with enhanced nutritional q ...

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Plant Transformation: Agrobacterium-Mediated Gene Transfer

Plant transformation is the process by which DNA is introduced into plant cells or tissues. The DNA can come from virtually any source. Gene transfer methodology has become part of an essential technology to manipulate plants for both scientific and commercial purposes. Transgenic plants, ...

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Production of Hairy Root Cultures and Transgenic Plants by Agrobacterium rhizogenes-Mediated Transformation

Agrobacterium rhizogenes-mediated transformation results in the development of hairy roots at the site of infection. The production of hairy roots involves cocultivation of explants with A. rhizogenes and the subsequent selection of hairy roots on hormone-free medium. Hairy roo ...

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Stable Transformation of Plant Cells by Particle Bombardment/Biolistics

Particle bombardment, or biolistics, is a commonly used method for genetic transformation of plants and other organisms. Millions of DNA-coated metal particles are shot at target cells or tissues using a biolistic device or gene gun. The DNA elutes off the particles that lodge inside the cells, a ...

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Electroporation: Introduction and Expression of Transgenes in Plant Protoplasts

An optimized protocol for the electroporation-based transfection of tobacco protoplasts is described that routinely results in transgene expression frequencies approaching 90%. The overall efficiency of the procedure depends collectively on numerous key parameters, in ...

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Floral Dip: Agrobacterium-Mediated Germ Line Transformation

Many researchers use the flowering plant Arabidopsis thaliana to study gene function and basic plant biology. This easy-to-grow, small plant is ideal for genetic studies as it has a relatively simple genome compared to crop plants and its genetic material has been recently sequenced. Anoth ...

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Production of Transgenic Crops by the Floral-Dip Method

The application of floral dipping toward the production of transformed plants has been rather limited. However, this procedure has enabled the successful production of transformed Medicago truncatula plants (a model plant for legume genetics) at efficiencies higher than those ob ...

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Regeneration of Transgenic Cassava From Transformed Embryogenic Tissues

Production of transgenic plants is gradually becoming routine in cassava biotechnology. Green cotyledons of maturing somatic embryos (somatic cotyledons for short) and friable embryogenic suspensions (FES) are the target tissues for transformation by Agrobacterium or bio ...

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Chloroplast Genetic Engineering to Improve Agronomic Traits

Major crop losses occur annually as a result of biotic and abiotic stresses. The ability to hyperexpress foreign proteins, single-step multigene engineering, lack of positive effect and gene silencing, vector sequences and pleiotropic effects have resulted in several hundred-fold ...

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Genetic Transformation of Conifers Utilizing Somatic Embryogenesis

Over the last 5 yr, the production of transgenic conifers has been greatly facilitated by the ability to transform somatic embryonal tissues (somatic embryos) via cocultivation with Agrobacterium tumefaciens. This has allowed us to develop protocols for the genetic transformation ...

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Genetic Transformation of Mature Citrus Plants

Most woody fruit species have long juvenile periods that drastically prolong the time required to analyze mature traits. Evaluation of characteristics related to fruits is a requisite to release any new variety into the market. Because of a decline in regenerative and transformation pot ...

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Organogenesis From Transformed Tomato Explants

Tomato was one of the first crops for which a genetic transformation system was reported involving regeneration by organogenesis from Agrobacterium-transformed explants. Since the initial reports, various factors have been studied that affect the efficiency of tomato transfo ...

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Histochemical and Fluorometric Assays for uidA (GUS) Gene Detection

Transgenic plant production has been intimately connected to the β-glucuronidase (uidA or GUS) gene used as a reporter marker gene. The enzyme stability and the high sensitivity and amenability of the GUS assay to qualitative (histochemical assay) and to quantitative (fluorometric or s ...

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Selectable Markers: Antibiotic and Herbicide Resistance

The low efficiencies of most plant transformation methods necessitate the use of selectable marker genes to identify those cells that successfully integrate and express transferred DNA. Genes conferring resistance to various antibiotics or herbicides are commonly used in labo ...

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Green Fluorescent Protein Quantification in Whole Plants

As future biotechnology applications utilize recombinant proteins as commercial products, nondestructive assays will be necessary to determine protein concentrations accurately within plant tissues. Green fluorescent protein (GFP) has been proposed as a potential mar ...

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