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Reconstitution of Membrane Transporters

An important goal for a biochemist studying a membrane transporter is to characterize various aspects of its transport function. Initial studies are often carried out in intact cells, but further work is often directed toward studying the functional properties of the purified protein. S ...

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Use of Pol I-Deficient E. coli for Functional Complementation of DNA Polymerase

The E. coli JS200 strain carries a temperature-sensitive allele of DNA polymerase I that renders this strain conditional lethal. Growth under restrictive conditions is restored by small amounts of DNA polymerase activity. Even mutants with greatly reduced (1–10% of wild-type) catalyt ...

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Genetic Complementation Protocols

Genetic selection provides a powerful tool for the study of cellular processes. It is particularly useful in analyzing protein sequence constraints when used in conjunction with directed molecular evolution. Our lab has used this approach to analyze the function of enzymes involved in D ...

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Selection of Novel Eukaryotic DNA Polymerases by Mutagenesis and Genetic Complementation of Yeast

DNA-directed DNA polymerases have been broadly classified into seven families based on their sequence homology (1). It is surprising to learn that enzymes such as DNA polymerases, which carry out pivotal role during DNA replication, repair, and recombination, are poorly conserved amon ...

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Autogene Selections

The evolution of proteins is more difficult than the evolution of nucleic acids both in principle and in practice. While nucleic acid sequence space has a dimensionality of 4n, where n is the size of the nucleic acid pool (i.e., G, C, A, and T), protein sequence space has a dimensionality of 20n. Similarly, while n ...

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Measurement of Membrane Fluidity and Membrane Fusion with Fluorescent Probes

The physicochemical and mechanical properties of phospholipids dispersed in an aqueous medium provide the molecular framework for many of the dynamic properties of cell membranes (1,2). The ability of protein molecules embedded in the plasma membrane to move laterally from one locat ...

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Extraction and Assay of Cyclic Nucleotides

Cyclic adenosine 3′,5′-monophosphate (cAMP) and cyclic guanosine 3′,5′-monophosphate (cGMP) have between them been implicated in the mediation of many physiological phenomena. Over the last 30 years, a number of techniques have been employed to assess changes in the amounts of these two mo ...

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Assay of Protein Kinases and Protein Phosphorylation

Part A. Protein Kinase-Mediated Phosphorylation Events Protein kinases (ATP:protein phosphotransferases) regulate a wide range of cellular events, including the transduction of signals leading to cell growth. Although the protein kinase superfamily encompasses a large and ...

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Analysis of G-Proteins Regulating Signal Transduction Pathways

Part A. Identification of G-Proteins The past decade has seen the emergence of a rapidly expanding superfamily of regulatory proteins, the G-proteins, that transduce as diverse a range of biological functions as protein synthesis, transmembrane signaling, intracellular traffic ...

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Analysis of Cellular Phosphoinositides and Phosphoinositols By High-Performance Liquid Chromatography

Part A. Sample and Standards Preparation In Chapter 18, the extraction procedures for recovery of the phosphoinositols and phosphoinositides from cells are described, together with simple separation procedures to resolve them into their general classes (InsP1; InsP2, and so on, and Pt ...

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Analysis of Cellular Phosphoinositides and Phosphoinositols by Extraction and Simple Analytical Procedures

Part A. Biosynthesis and Extraction of Phosphoinositides and Phosphoinositols The minor inositol-containing membrane phospholipids, the phosphoinositides, play a central role in cell signal transduction. Activation of a hormone-sensitive phospholipase C (phosphoi ...

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Crystallization of Membrane Proteins for X-Ray Analysis

In order to determine the structure of a protein by X-ray crystallography, well ordered three-dimensional crystals are required. However, despite the wealth of experience accumulated in the course of the crystallization and structural analyses of several hundred soluble globular ...

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Cytosolic Free Calcium Measurements in Single Cells Using Calcium-Sensitive Fluorochromes

Despite a 10,000-fold gradient of Ca2+ across the cell membrane, the concentration of cytosolic free calcium, i, is regulated with remarkable constancy. A combination of mechanisms precisely regulate i at nanomolar levels. These include influx of Ca2+ via plasma membrane calcium channe ...

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Membrane Permeabilization with Bacterial Toxins

Many cell functions are controlled by molecular signals (hormones, neurotransmitters, and so forth) that interact with cell-surface receptors and trigger specific intracellular responses. Intracellular signaling can be difficult to study in isolated, purified systems, be ...

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Ligand Binding and Processing: The Perfused Liver as a Model System

Receptor-mediated endocytosis is the process used by all eukaryotic cells to internalize a variety of biologically important macromolecules, e.g., transport proteins that deliver nutrients to cells (1,2), plasma proteins (3), hormones and growth factors (4,5), and lysosomal enzym ...

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Measurement of Ion Fluxes and pH Gradients Across Cell Membranes

Movement of ions across cell membranes is associated with processes such as cell signaling, regulation of cell volume, maintenance of cell composition and pH, and energy transduction. Even in the erythrocyte, a very specialized cell with limited biological function, 11 different trans ...

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The Binding of Protein-Ligands to Cell-Surface Receptors

The study of proteins and glycoproteins as biologically active ligands is an expanding area of research, stimulated in part by the identification of growth factors and cytokines and, in particular, those involved in the regulation of hemopoiesis and the inmiune response. The exquisite se ...

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Determination of Cell-Surface Polarity by Solid-Phase Lactoperoxidase Iodination

The ability to compartmentalize function has enabled multicellular organisms to evolve sophisticated physiological systems. At the cellular level, compartmentalization of function is established by the maintenance of asymmetric structure and function between the apic ...

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Biochemical Methods to Determine Cell-Surface Topography: Part A. Labeling of Oxidized Glycoproteins with 3H-Borohydride

This method selectively labels glycoproteins on the cell surface. Tritiated borohydride reduction may follow chemical oxidation of vicinal hydroxyl groups by sodium periodate or enzymatic oxidation by galactose oxidase (GAO).** The periodate oxidation is more effi cient. It gene ...

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Use of Antipeptide Antibodies for the Isolation and Study of Membrane Proteins: Part A. Preparation of Antibodies

Integral membrane proteins of physiological importance, such as ion channels, transporters, receptors, and enzymes, are usually minor components of the membrane. This low abundance, coupled with their hydrophobicity and frequent instability in detergent solution, renders th ...

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