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Chromatin Immunoprecipitation Assay for Mammalian Tissues

In this postgenome era, understanding how a cell regulates access to information encoded in the deoxyribonucleic acid (DNA) is essential. In eukaryotic cells, DNA is bound to histone proteins to form chromatin fibers. Numerous studies have now shown that post-translational histone mod ...

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Analysis of DNA Methylation Profiles in Preimplantation Embryos Using Bisulfite Mutagenesis

For developmental competence of mammalian embryos, dynamic epigenetic changes to both the maternally and paternally derived contributions to the genome of the zygote should be brought about in the early cleavage stages. DNA methylation is a typical epigenetic mark modified during pr ...

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Nuclear Transplantation in Xenopus

Nuclear transplantation in amphibia started in 1952. By this is meant, sexually mature cloned frogs can be obtained from the nuclei of embryo cells, differentiating cells, and larval-differentiated cells. Transplanted nuclei are reprogrammed to entirely new patterns of gene expres ...

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In Vivo Genomic Footprinting Using LMPCR Methods

Epigenetic regulatory proteins such as transcription factors, chromatin components, and chromatin modification activities alter gene activity during development University of Leeds;. The means by which alterations in these factors influence gene expression is poorly und ...

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Nuclear Transfer in Sheep

Somatic cell nuclear transfer is a complex and intricate procedure with a low success rate. Despite advances in embryo culture and the production of specialized tools and equipment success rate has remained poor. The procedure remains basically the same despite technical innovations b ...

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Analyzing Histone Modification Using Crosslinked Chromatin Treated With Micrococcal Nuclease

Epigenetic processes involve alterations in the covalent modification of histones, which are driven by sequence-specific transcription factors recruiting the enzymatic machinery performing these reactions. Such histone modifications alter the charge or biochemical ...

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Synthesis of Polyampholyte Comb-Type Copolymers Consisting of a Poly(L-lysine) Backbone and Hyaluronic Acid Side Chains for DNA Carrier

Polycations have been used as nonviral gene carriers because the polycations and DNAs form stable complexes in a noncovalent manner (1–3). The polycations, e.g., poly(L-lysine) (PLL), are reported to be conjugated with several ligands for targeted gene delivery (4–8). The physicochemical ...

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Tetracycline-Regulated Gene Expression in Epidermal Keratinocytes

The tetracycline-regulated expression system developed by Gossen and Bujard is a powerful genetic tool that permits the expression of any gene construct introduced into either cultured cells or transgenic animals to be precisely controlled. It involves two components, a regulato ...

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Promoter Analysis in the Human SPRR Gene Family

Protocols to study the regulation of a conserved multigene family (SPRR genes) during calcium-induced differentiation of cultured normal human keratinocytes (NHKs) are provided. Transfection of promoter-reporter (CAT or luciferase) constructs, combined with promoter tr ...

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Gene Targeting by Oligonucleotides in Keratinocytes

Oligonucleotide-directed gene alteration produces a targeted deoxyribonucleic acid (DNA) sequence change in the genome of mammalian cells at low frequency that is only detectable by highly sensitive methods. To measure the low frequency, we have established an assay using the mutant ...

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Stable Integration of Large PAC Constructs in Keratinocytes

Transfer of P1-derived artificial chromosome (PAC) deoxyribonucleic acid (DNA) into keratinocytes is an extremely important technique that enables functional studies of keratinocyte-specific genes to be performed and genomic gene therapy for inherited and acquired disea ...

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Methods to Study Protein-Protein Interactions

Protein-protein interactions are the underpinnings of a vast number of cellular processes. In recent years, the convergence of biochemistry, cellular, and molecular biology has made available a number of powerful techniques for studying such interactions. These techniques vary in ...

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Targeted Somatic Mutagenesis in the Mouse Epidermis

The efficient introduction of somatic mutations in a given gene at a given time and in specific cell types of the skin will greatly facilitate the studies of a number of genes expressed in the skin and the production of animal models for skin diseases. We describe here strategies and techniques to create ...

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Isolation of Recombinant Phage-Displayed Antibodies Recognizing Skin Keratinocytes

Advances in our understanding of biology at the molecular level are very much driven by improvements in the scientist’s tool box. Such improvements may not only be an introduction of new techniques like polymerase chain reaction, but as much an increment of for example the sensitivity of existi ...

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Serial Analysis of Gene Expression in Human Keratinocytes and Epidermis

The demand for large-scale gene expression analysis tools is on the rise now that several genomes have been sequenced. One of these tools, serial analysis of gene expression (SAGE), allows the qualitative as well as quantitative analysis of a large number of genes in a defined tissue or culture model. ...

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Analysis of Tissue-Specific DNA Methylation During Development

The establishment of a cell identification method more accurate than the conventional morphological and cell-type-specific marker analyses has been desired. DNA methylation is related to the gene activity including gene-silencing and is a key mechanism of epigenetics underling ...

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Methods for Gene Expression Profiling in Dermatology Research Using DermArray Nylon Filter DNA Microarrays

Here we present methods of gene expression profiling using nylon filter deoxyribonucleic acid (DNA) microarrays and radiolabeled and nonradiolabeled hybridization probes. DermArray� nylon filter DNA microarrays were designed specifically for use in dermatology resear ...

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Two-Photon Fluorescence Imaging and Reactive Oxygen Species Detection Within the Epidermis

Two-photon fluorescence microscopy is used to detect ultraviolet-induced reactive oxygen species (ROS) in the epidermis and the dermis of ex vivo human skin and skin equivalents. Skin is incubated with the nonfluorescent ROS probe dihydrorhodamine, which reacts with ROS such as singl ...

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Epidermis-Targeted Gene Transfer Using In Vivo Electroporation

The skin is an important target for gene transfer because of its easy accessibility. Recently, we demonstrated that an in vivo electroporation approach could be applied to plasmid deoxyribonucleic acid delivery in rat skin of the abdominal area. Plate-and-fork type electrodes were effe ...

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In Vivo Transplantation of Engineered Human Skin

Tissue engineering approaches have enabled the development of methodologies that allow long-term, in vivo studies in epidermal biology. This has been accomplished through in vivo transplantation of human epidermal cells fabricated as three-dimensional, skin-equivalents in ...

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