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Methyltransferase-based single-promoter analysis assay

IntroductionNucleosomal positioning plays a pivotal role in the regulation of transcriptional initiation. Transcriptional co-activator complexes interact with nucleosomes (4) to induce nucleosomal re ...

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Plant DNA methylation analysis by bisulfite genomic sequencing

IntroductionThe following "bisulfite genomic sequencing" protocol has been optimized for the determination of DNA cytosine methylation at transgene loci in plants. The conditions used are based on the ...

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Single-molecule analysis of DNA replication by molecular combing

IntroductionEfficient duplication of eukaryotic genomes relies on the sequential activation of thousands of replication origins distributed along the chromosomes. This process follows a complex spatia ...

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MONOCOT DNA ISOLATION

Collect fresh tissue and store at -20°C. Grind leaf tissue to a fine powder with liquid nitrogen in a prechilled mortar . Transfer ground tissue with a chilled paintbrush into a well-chilled 50-ml pol ...

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DNA digestion and Southern blotting procedure for monocot DNA

DNA Digestion Make a cocktail as follows: Southern hybridization cocktail 10 X buffer3.50 µLBSA 0.35 µLddH205.65 µLRNase 0.50 mLEcoRI 10.00 µLTOTAL20.00 µL/tubeAdd 15 μL DNA to each tube containing 2 ...

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Prehybridization and probe labeling

Prehybridization Set hybridization oven to 65°C. Thaw 32P isotope in hood. Place membrane in hybridization tube. Add 50 mL of prehybridization buffer to each tube. Prehybridization buffer ddH20125 mL ...

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Hybridization procedure

Hybridization Hybridization buffer ddH2025.0 mL20X SSPE12.0 mL100X Denhardt's solution2.0 mL20% SDS1.0 mLSalmon sperm DNA 0.2 mLdextran sulfate2.0 gTOTAL40.2 mLReplace prehybridization buffer in each ...

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KSUD14-STS ASSAY FOR TAGGING Lr21

New D14 primers.Lr21L:CGC TTT TAC CGA GAT TGG TC Lr21R:TCT GGT ATC TCA CGA AGC CTT Lr21: 669 bplr21-Fielder: 757 bplr21-Wichita: 774 bpRecipe (in 25 µl reaction). Buffer (10X)2.5 µl2.5 mM dNTP2.5 µl25 ...

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KSUD14-STS ASSAY FOR TAGGING Lr21

New D14 primers.Lr21L:CGC TTT TAC CGA GAT TGG TC Lr21R:TCT GGT ATC TCA CGA AGC CTT Lr21: 669 bplr21-Fielder: 757 bplr21-Wichita: 774 bpRecipe (in 25 µl reaction). Buffer (10X)2.5 µl2.5 mM dNTP2.5 µl25 ...

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Genomic DNA Labeling Protocol

Developed for microarray-based comparative genomic hybridization.Genomic DNA can be labeled with a simple random-priming protocol based on Gibco/BRL's Bioprime DNA Labeling kit though nick translation ...

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Single Strand Conformation Polymorphism (SSCP) Analysis using Nondenaturing PAGE

PrincipleSingle-strand conformation polymorphism (SSCP) technique is a simple and efficient means to detect any small alteration in PCR-amplified products. It is based on the assumption that subtle nu ...

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A/B/C Random Amplification Protocol

Genomic DNA will be randomly primed with a sequence tagged oligonucleotide for 2 cycles. This will create random genomic products with a specific tag at both ends. These products will then be amplifi ...

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A/B/C Random Amplification Protocol

Genomic DNA will be randomly primed with a sequence tagged oligonucleotide for 2 cycles. This will create random genomic products with a specific tag at both ends. These products will then be amplifi ...

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Alcohol Precipitation of DNA

The major considerations in using alcohol to precipitate DNA are:Temperature: -20°C is optimal but 0°C can be used for 20 ng/mL2) Amount: For small amount of DNA ( i.e. too little to reliably see a pe ...

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Tail DNA Preparation

Reagents:Lysis Buffer: (10 mM Tris pH8 100 mM NaCl 25 mM EDTA 0.5%SDS) store at room temp.10 mg/mL Proteinase K: 100 mg (Roche) + 10 mL buffer (10 mM Tris pH8.0 20 mM CaCl2 50% (v/v) glycerol) store ...

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AML Sample genomic DNA Preparation

SolutionsPBSCell lysis buffer: 10 mM Tris pH8 100 mM NaCl 25 mM EDTA 0.5% (w/v) SDS 0.5 mg/mL proteinase KFixative: 1 volume glacial acetic acid + 3 volumes methanolTrizol reagent75% EtOH made with ...

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A Modified Protocol for Bisulfite Genomic Sequencing of Difficult Samples

The bisulfite genomic sequencing protocol is a widely used method for analyzing DNA methylation. It relies on the deamination of unmethylated cytosine residues to uracil; however its high rates of DNA ...

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Methyl DNA Immunoprecipitation

Epigenetics is the study of heritable changes in gene expression. Chromatin immunoprecipitation (ChIP) and methylation status analysis of genes have been applied to the study of epigenetic modificatio ...

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SNuPE Protocol

Make sure that there is enough dCTP and TTP (or dGTP and dATP) in the hot room Set up your PCR master mix. Remember that you need to do a reaction for dCTP and TTP for each sample 10xPCR Buffer 2.5u ...

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Ancient DNA extraction from bones and teeth

Ancient DNA extraction from bones and teeth.pdf ...

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