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文献和实验proteins, termed Rosetta stone sequences, help link disparate proteins together, and suggest the likelihood of functional interactions between the linked entities, describing local and global relationships within the proteome. These relationships help
Redesigning the Specificity of ProteinDNA Interactions with Rosetta
, we present the current state of protein–DNA interface design with the Rosetta macromolecular modeling program. The LAGLIDADG endonuclease family of DNA-cleaving enzymes, under study as potential gene therapy reagents, has been the main testing ground
Rosetta Ligand Docking with Flexible XML Protocols
[1]. The latest release of Rosetta ligand software includes many new features, such as (1) docking of multiple ligands simultaneously, (2) representing ligands as fragments for greater flexibility, (3) redesign of the interface during docking, and (4) an XML
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