阿尔茨海默病脑中TMEM106B表达降低

TMEM106B expression is reduced in Alzheimer's disease brains.

作者信息Jun-Ichi Satoh, Yoshihiro Kino, Natsuki Kawana, Yoji Yamamoto, Tsuyoshi Ishida, Yuko Saito, Kunimasa Arima
PMID24684749
发布时间2014-03-31
DOI10.1186/alzrt247

实验完整度

包含qPCR、Western blot、免疫组化及过表达实验,但缺乏功能获得或丧失实验和动物模型验证。

主要模型

人脑组织(AD和non-AD病例) SK-N-SH神经母细胞瘤细胞

重点核对

AD病例数:6例(免疫组化)/7例(qPCR/WB) 非AD病例数:13例(免疫组化)/14例(qPCR/WB) 检测指标:TMEM106B、PGRN、NFH、GFAP、NEUN mRNA及蛋白表达 对照:非AD脑组(NC, ALS, PD, MSA) 统计分析:Student's t检验、Pearson相关性

摘要

INTRODUCTION: TMEM106B is a transmembrane glycoprotein of unknown function located within endosome/lysosome compartments expressed ubiquitously in various cell types. Previously, the genome-wide association study (GWAS) identified a significant association of TMEM106B single nucleotide polymorphisms (SNPs) with development of frontotemporal lobar degeneration with ubiquitinated TAR DNA-binding protein-43 (TDP-43)-positive inclusions (FTLD-TDP), particularly in the patients exhibiting the progranulin (PGRN) gene (GRN) mutations. Recent studies indicate that TMEM106B plays a pathological role in various neurodegenerative diseases, including Alzheimer's disease (AD). However, at present, the precise levels of TMEM106B expression in AD brains remain unknown.METHODS: By quantitative reverse transcription (RT)-PCR (qPCR), western blot and immunohistochemistry, we studied TMEM106B and PGRN expression levels in a series of AD and control brains, including amyotrophic lateral sclerosis, Parkinson's disease, multiple system atrophy and non-neurological cases.RESULTS: In AD brains, TMEM106B mRNA and protein levels were significantly reduced, whereas PGRN mRNA levels were elevated, compared with the levels in non-AD brains. In all brains, TMEM106B was expressed in the majority of cortical neurons, hippocampal neurons, and some populations of oligodendrocytes, reactive astrocytes and microglia with the location in the cytoplasm. In AD brains, surviving neurons expressed intense TMEM106B immunoreactivity, while senile plaques, neurofibrillary tangles and the perivascular neuropil, almost devoid of TMEM106B, intensely expressed PGRN.CONCLUSIONS: We found an inverse relationship between TMEM106B (downregulation) and PGRN (upregulation) expression levels in AD brains, suggesting a key role of TMEM106B in the pathological processes of AD.

实验结论

提炼研究问题、关键发现与证据,快速把握文章的核心贡献。

研究问题
TMEM106B在AD脑中的表达水平是否与非AD脑存在差异,及其与PGRN表达的关系。
核心机制
TMEM106B表达下调与PGRN表达上调的负相关关系,可能提示TMEM106B在AD病理中的保护作用,但机制未明确。
主要证据
qPCR显示AD脑TMEM106B mRNA显著降低(P=0.0035),PGRN mRNA显著升高(P=0.0027),且两者呈负相关(r=-0.555, P=0.0090);Western blot显示TMEM106B蛋白显著降低(P=0.0000004),PGRN蛋白无显著差异;免疫组化显示AD脑中存活神经元表达TMEM106B,而老年斑等表达PGRN。
研究意义
提示TMEM106B在AD病理过程中起积极作用,但需进一步体外和体内TMEM106B敲低模型验证其保护作用。

研究路径

按研究推进顺序梳理实验设计、验证步骤与关键观察。

1

TMEM106B进化保守性分析

评估TMEM106B在物种间的保守性及其与旁系同源物的同源性。

使用CLC Free Workbench进行多序列比对,比较人类TMEM106B与多种脊椎动物及TMEM106A/C的氨基酸序列。

2

TMEM106B及旁系同源物在神经细胞中的表达分析

检测TMEM106A/B/C和PGRN在多种人神经细胞中的mRNA表达。

通过RT-PCR分析人脑组织、星形胶质细胞、神经祖细胞、NTera2、SK-N-SH、IMR-32、U-373MG、T98G和HMO6细胞中TMEM106A/B/C和PGRN的mRNA表达。

3

AD和non-AD脑的mRNA表达比较

比较AD和非AD脑中TMEM106B、PGRN及相关基因的mRNA水平。

通过qPCR检测人脑组织样本中TMEM106B、PGRN、NFH、GFAP和NEUN的mRNA水平,并标准化至G3PDH。

4

抗TMEM106B抗体特异性验证

验证用于Western blot和免疫组化的抗TMEM106B抗体的特异性。

在HeLa细胞中瞬时表达Xpress标记的TMEM106A/B/C,通过Western blot检测抗体A303-439A的反应性。

5

AD和non-AD脑的蛋白表达比较

比较AD和非AD脑中TMEM106B和PGRN的蛋白水平。

通过Western blot分析人脑组织样本中TMEM106B、PGRN和HSP60的蛋白水平,标准化至HSP60。

6

TMEM106B和PGRN的免疫组化定位

观察AD和非AD脑中TMEM106B和PGRN的细胞分布和病理学相关性。

使用抗TMEM106B(A303-439A)和抗PGRN(EPR3781)抗体进行免疫组化染色,检查额叶皮质和海马。

7

过表达实验验证转录调控关系

检测TMEM106B或PGRN过表达是否影响彼此的内源mRNA水平。

在SK-N-SH细胞中瞬时表达Xpress标记的TMEM106B、PGRN或LacZ,通过qPCR检测内源TMEM106B和PGRN mRNA水平。

研究方法

按研究目的归类文中使用的方法,便于定位所需技术。

产品清单

实验环节名称品牌货号
抗TMEM106B抗体Bethyl LaboratoriesA303-439A
抗PGRN抗体AbcamEPR3781
抗pS409/410 TDP-43抗体Cosmo BioTIP-PTD-M01
过氧化物酶偶联二抗Nichirei--
TRIzol试剂Invitrogen--
SuperScript II逆转录酶Invitrogen--
HotStar Taq DNA聚合酶Qiagen--
LightCycler ST300Roche Diagnostics--
SYBR Green I----
PfuTurbo DNA聚合酶Agilent Technologies--
pcDNA4/HisMax-TOPO载体Invitrogen--
Lipofectamine 2000转染试剂Invitrogen--
RIPA裂解液Sigma--
NP-40裂解液----
蛋白酶抑制剂混合物Sigma--
抗TMEM106B抗体Biossbs-11694R
抗TMEM106B抗体Proteintech20995-1-AP
抗Xpress抗体Invitrogen--
HRP偶联抗兔IgGSanta Cruz Biotechnology--
化学发光底物Pierce--
抗HSP60抗体Santa Cruz Biotechnologysc-1052
ImageJ软件National Institute of Health--

关键环节

汇总复现实验时建议重点确认的条件及原文阅读提示。

环节核对要点
人脑组织来源
样本类型、病例数、诊断标准、死后间隔
阅读提示:Materials and methods: Human brain tissues
qPCR
引物序列、内参基因、标准化方法、重复数
阅读提示:Materials and methods: Reverse transcriptase-polymerase chain reaction analysis
Western blot
抗体、蛋白提取缓冲液、内参蛋白、上样量、图像定量方法
阅读提示:Materials and methods: Western blot analysis
免疫组化
固定方式、抗原修复条件、抗体浓度、孵育时间、检测系统
阅读提示:Materials and methods: Immunohistochemistry