基于空间转录组测序的三叉神经痛大鼠三叉神经原位组织图谱研究

In situ tissue profile of rat trigeminal nerve in trigeminal neuralgia using spatial transcriptome sequencing

作者信息Wenbin Wei, Yuemin Liu, Yifen Shen, Tao Yang, Yabing Dong, Zixiang Han, Yiwen Wang, Zhiyang Liu, Ying Chai, Mengjie Zhang, Hanshao Wang, Hao Shen, Yihang Shen, Minjie Chen
PMID38270619
期刊Int J Surg
发布时间2024-03-01
DOI10.1097/JS9.0000000000001110

摘要

Background: Trigeminal neuralgia (TN) is the most common neuropathic disorder in the maxillofacial region. The etiology and pathogenesis of TN have not been clearly determined to date, although there are many hypotheses. Objective: The goal of this study was to investigate the interactions between different types of cells in TN, particularly the impact and intrinsic mechanism of demyelination on the trigeminal ganglion, and to identify new important target genes and regulatory pathways in TN. Methods: TN rat models were prepared by trigeminal root compression, and trigeminal nerve tissues were isolated for spatial transcriptome sequencing. The gene expression matrix was reduced dimensionally by PCA and presented by UMAP. Gene function annotation was analyzed by Metascape. The progression of certain clusters and the developmental pseudotime were analyzed using the Monocle package. Modules of the gene coexpression network between different groups were analyzed based on weighted gene coexpression network analysis and assigned AddModuleScore values. The intercellular communication of genes in these networks via ligand-receptor interactions was analyzed using CellPhoneDB analysis. Results: The results suggested that the trigeminal ganglion could affect Schwann cell demyelination and remyelination responses through many ligand-receptor interactions, while the effect of Schwann cells on the trigeminal ganglion was much weaker. Additionally, ferroptosis may be involved in the demyelination of Schwann cells. Conclusions: This study provides spatial transcriptomics sequencing data on TN, reveals new markers, and redefines the relationship between the ganglion and myelin sheath, providing a theoretical basis and supporting data for future mechanistic research and drug development.

实验方法

产品清单

名称品牌货号
冯弗雷细丝Shanghai Yuyan Instruments Co., Ltd.514009
CryoStar NX70冰冻切片机Thermo Fisher ScientificNX70
Visium空间组织优化载玻片10× Genomics--
NovaSeq 6000平台--6000
冰冻切片机Thermo Fisher Scientific--
荧光显微镜Leica BiosystemsDM2000