Administering GBrowse Sites with WebGBrowse
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- Abstract
- Table of Contents
- Figures
- Literature Cited
Abstract
GBrowse is widely used by biologists to visualize genome annotation. We have developed WebGBrowse to facilitate hosting multiple GBrowse instances specific for different users on the same Web server. WebGBrowse automatically sets up each user?specific GBrowse instance by extracting information from user?supplied data to produce the appropriate configuration. This unit describes installation and administration of WebGBrowse for bioinformaticians who plan to manage local WebGBrowse servers in their institutions.Curr. Protoc. Bioinform. 33:9.14.1?9.14.9. © 2011 by John Wiley & Sons, Inc.
Keywords: Genome Browser; WebGBrowse; GBrowse; GMOD; visualization; genome; annotation
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PDF or HTML at Wiley Online LibraryTable of Contents
- Introduction
- Basic Protocol 1: Installing WebGBrowse
- Basic Protocol 2: Testing the WebGBrowse Server
- Guidelines for Understanding Results
- Commentary
- Literature Cited
- Figures
- Tables
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Figure 9.14.1 Overview of WebGBrowse architecture. See text for details. View Image
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Literature Cited
| Literature Cited | |
| Podicheti, R. and Dong, Q. 2010. Using WebGBrowse to Visualize Genome Annotation on GBrowse. Cold Spring Harb. Protoc. doi:10.1101/pdb.prot5392. | |
| Podicheti, R., Gollapudi, R., and Dong, Q. 2009. WebGBrowse: A web server for GBrowse. Bioinformatics 25:1550‐1551. | |
| Stein, L.D., Mungall, C., Shu, S., Caudy, M., Mangone, M., Day, A., Nickerson, E., Stajich, J.E., Harris, T.W., Arva, A., and Lewis, S. 2002. The generic genome browser: A building block for a model organism system database. Genome Res. 12:1599‐1610. |
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