• 我要登录|
  • 免费注册
    |
  • 我的丁香通
    • 企业机构:
    • 成为企业机构
    • 个人用户:
    • 个人中心
  • 移动端
    移动端
丁香通 logo丁香实验_LOGO
搜实验

    大家都在搜

      大家都在搜

        0 人通过求购买到了急需的产品
        免费发布求购
        发布求购
        点赞
        收藏
        wx-share
        分享

        【资源】2个miRNA的数据库

        丁香园论坛

        2062
        浏览核酸研究2006年数据库专刊的时候,发现了两个miRNA的序列数据库。

        miRNAmap:

        [color\blue]http://nar.oxfordjournals.org/content/vol34/suppl_1/index.dtl

        what is miRNmap
        We establish genomic maps for microRNA precursors and their mapping to targets in vertebrate genomes, namely miRNAMap. In this system we collect published miRNAs from the microRNA registry (Griffiths-Jones S. et al, 2004) and predict putative miRNA precursors by RNAz which is based on genome-wide mapping of conserved RNA secondary structures from UCSC clustering (Washietl 2005). We also predict the mature miRNAs by an algorithm which is based on MDD (maximal dependence decomposition), all of the putative and known mature miRNAs have been detected their targets by miRanda (Enright et al, 2003) and RNAhybrid (Rehmsmeier et al,2004) results.

        【资源】2个miRNA的数据库

        下面是这个数据库的教程:

        [iframe]http://mirnamap.mbc.nctu.edu.tw/html/tutorial.html[/iframe]

        miRbase

        http://microrna.sanger.ac.uk/sequences/index.shtml

        miRBase (http://microrna.sanger.ac.uk/) is the new home of microRNA data on the web, providing data previously accessible from the miRNA Registry. Old miRNA Registry addresses should redirect you to this page.

        ~undefined The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry.
        ~undefined The miRBase Registry continues to provide gene hunters with unique names for novel miRNA genes prior to publication of results.
        ~undefined The miRBase Targets database is a new resource of predicted miRNA targets in animals.

        Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching using BLAST and SSEARCH, and entries can also be retrieved by name, keyword, references and annotation. All sequence and annotation data are also available for download.

        【资源】2个miRNA的数据库

        【资源】2个miRNA的数据库

        核酸研究关于这两个数据库的介绍文章:

        miRNAmap
        http://nar.oxfordjournals.org/cgi/reprint/34/suppl_1/D135
        miRbase:
        http://nar.oxfordjournals.org/cgi/content/full/34/suppl_1/D140
        ad image
        提问
        扫一扫
        丁香实验小程序二维码
        实验小助手
        丁香实验公众号二维码
        扫码领资料
        反馈
        TOP
        打开小程序