【转帖】Top 100 proteomics publications
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1888
Top 100 proteomics publications
----From Ion Channel Media Group：ttp://www.ionchannelmedia.com/websites.php
1. Gavin et al. (2006) Proteome survey reveals modularity of the yeast
cell machinery. Nature
2. Bonetta et al. (2006) Protein purification: proteomics at Harvard. Nature
3 .Hummon et al. (2006) From the genome to the proteome: uncovering
peptides in the Apis brain. Science
4. Chu et al. (2006) Sperm chromatin proteomics identifies evolutionarily
conserved fertility factors. Nature
5. Angers et al. (2006) Molecular architecture and assembly of the
DDB1-CUL4A ubiquitin ligase machinery. Nature
6. Foster et al. (2006) A Mammalian Organelle Map by Protein Correlation
Profiling. Cell
7. Liotta et al. (2006) Serum peptidome for cancer detection: spinning
biologic trash into diagnostic gold. J Clin Invest
8. Li et al. (2006) An intron with a constitutive transport element is
retained in a Tap messenger RNA. Nature
9. Miller et al. (2006) Semi-conservative DNA replication through
telomeres requires Taz1. Nature
10. Wang et al. (2006) Hsp90 Cochaperone Aha1 Downregulation Rescues
Misfolding of CFTR in Cystic Fibrosis. Cell
11. Olsen et al. (2006) Global, In Vivo, and Site-Specific Phosphorylation
Dynamics in Signaling Networks. Cell
12.Broadhead et al. (2006) Flagellar motility is required for the
viability of the bloodstream trypanosome. Nature
13. Gandhi et al. (2006) Analysis of the human protein interactome and
comparison with yeast, worm and fly interaction datasets. Nat Genet
14. Gilchrist et al. (2006) Quantitative proteomics analysis of the
secretory pathway. Cell
15. Petricoin et al. (2006) The blood peptidome: a higher dimesion of
information content for cancer biomarker discovery. Nat Rev Cancer
16. Schubert et al. (2006) Analyzing proteome topology and function by
automated multidimensional fluorescence microscopy. Nat Biotechnol
17. Roth et al. (2006) Global analysis of protein palmitoylation in yeast.
Cell
18. Collyda et al. (2006) Fuzzy Hidden Markov Models: A New Approach In
Multiple Sequence Alignment. Stud Health Technol Inform
19. Alt谋nta艧 et al. (2006) Efficient removal of albumin from human serum
by monosize dye-affinity beads. J Chromatogr B Analyt Technol Biomed Life
Sci
20. Chung et al. (2006) Genomics and proteomics: Emerging technologies in
clinical cancer research. Crit Rev Oncol Hematol
21. Kislinger et al. (2006) Global survey of organ and organelle protein
expression in mouse: combined proteomic and transcriptomic profiling. Cell
22. Batada et al. (2006) Stratus Not Altocumulus: A New View of the Yeast
Protein Interaction Network. PLoS Biol
23. Neher et al. (2006) Proteomic Profiling of ClpXP Substrates after DNA
Damage Reveals Extensive Instability within SOS Regulon. Mol Cell
24. Righetti et al. (2006) Real and imaginary artefacts in proteome
analysis via two-dimensional maps. J Chromatogr B Analyt Technol Biomed
Life Sci
25. Dorus et al. (2006) Genomic and functional evolution of the Drosophila
melanogaster sperm proteome. Nat Genet
26. Wilmes et al. (2006) Metaproteomics: studying functional gene
expression in microbial ecosystems. Trends Microbiol
27. Macek et al. (2006) Top-down protein sequencing and MS3 on a hybrid
linear quadrupole ion trap-orbitrap mass spectrometer. Mol Cell Proteomics
28. Hao et al. (2006) SNOSID, a proteomic method for identification of
cysteine S-nitrosylation sites in complex protein mixtures. Proc Natl Acad
Sci U S A
29. Salzano et al. (2005) Mass spectrometry for protein identification and
the study of post translational modifications. Ann Ist Super Sanita
30. Andersen et al. (2006) Organellar proteomics: turning inventories into
insights. EMBO Rep
31. Pozzi Mucelli et al. (2006) Proteomic studies on the white matter of
human brain. J Chromatogr B Analyt Technol Biomed Life Sci
32. Kashino et al. (2006) Preparation of membrane proteins for analysis by
two-dimensional gel electrophoresis. J Chromatogr B Analyt Technol Biomed
Life Sci
33. Mougeot et al. (2006) Gene Expression Profiling of Ovarian Tissues for
Determination of Molecular Pathways Reflective of Tumorigenesis. J Mol
Biol
34. Hinsby et al. (2006) A wiring of the human nucleolus. Mol Cell
35. Fukata et al. (2006) Epilepsy-related ligand/receptor complex LGI1 and
ADAM22 regulate synaptic transmission. Science
36. Carroll et al. (2006) Definition of the mitochondrial proteome by
measurement of molecular masses of membrane proteins. Proc Natl Acad Sci U
S A
37. Cho et al. (2006) Regulatory functions of nuclear hexokinase1 complex
in glucose signaling. Cell
38. Duchaine et al. (2006) Functional Proteomics Reveals the Biochemical
Niche of C. elegans DCR-1 in Multiple Small-RNA-Mediated Pathways. Cell
39. Savitski et al. (2006) ModifiComb: New proteomics tool for mapping
substochiometric post-translational modifications, finding novel types of
modifications and fingerprinting complex protein mixtures. Mol Cell
Proteomics
40. Haas et al. (2006) Optimization and use of peptide mass measurement
accuracy in shotgun proteomics. Mol Cell Proteomics
41. Chich et al. (2006) Statistics for proteomics: Experimental design and
2-DE differential analysis. J Chromatogr B Analyt Technol Biomed Life Sci
42. Fuentes et al. (2006) Solid phase proteomics: Dramatic reinforcement
of very weak protein-protein interactions. J Chromatogr B Analyt Technol
Biomed Life Sci
43. von Kriegsheim et al. (2006) Regulation of the Raf-MEK-ERK pathway by
protein phosphatase 5. Nat Cell Biol
44. Sprinzak et al. (2006) Characterization and prediction of
protein-protein interactions within and between complexes. Proc Natl Acad
Sci U S A
45. Veenstra et al. (2006) Global and targeted quantitative proteomics for
biomarker discovery. J Chromatogr B Analyt Technol Biomed Life Sci
46. Guerrier et al. (2006) Reducing protein concentration range of
biological samples using solid-phase ligand libraries. J Chromatogr B
Analyt Technol Biomed Life Sci
47. Gourion et al. (2006) A proteomic study of Methylobacterium extorquens
reveals a response regulator essential for epiphytic growth. Proc Natl
Acad Sci U S A
48. Dattelbaum et al. (2006) Surface-assisted laser desorption/ionization
mass spectrometry. Expert Rev Proteomics
49. Ji et al. (2006) A sample preparation process for LC-MS/MS analysis of
total protein drug concentrations in monkey plasma samples with antibody.
J Chromatogr B Analyt Technol Biomed Life Sci
50. Plowman et al. (2006) The proteomics of keratin proteins. J Chromatogr
B Analyt Technol Biomed Life Sci
51. Picariello et al. (2006) Proteomic study of muscle sarcoplasmic
proteins using AUT-PAGE/SDS-PAGE as two-dimensional gel electrophoresis. J
Chromatogr B Analyt Technol Biomed Life Sci
52. Pirondini et al. (2006) A 2-D liquid-phase chromatography for
proteomic analysis in plant tissues. J Chromatogr B Analyt Technol Biomed
Life Sci
53. et al. (2006) Mass spectrometrical verification of stomatin-like
protein 2 (SLP-2) primary structure. Proteins
54. Cheng et al. (2005) PDIP38 Associates with Proteins Constituting the
Mitochondrial DNA Nucleoid. J Biochem (Tokyo)
55. Dacheux et al. (2006) Human epididymal secretome and proteome. Mol
Cell Endocrinol
56. Hortin et al. (2006) The MALDI TOF Mass Spectrometric View of the
Plasma Proteome and Peptidome. Clin Chem
57. Snelling et al. (2006) Proteomic analysis and protein expression
during sporozoite excystation of Cryptosporidium parvum (coccidia,
Apicomplexa). Mol Cell Proteomics
58. Lee et al. (2006) Proteome analysis of human hair shaft: From protein
identification to posttranslational modification. Mol Cell Proteomics
59. Stead et al. (2006) Universal metrics for quality assessment of
protein identifications by mass spectrometry. Mol Cell Proteomics
60. States et al. (2006) Challenges in deriving high-confidence protein
identifications from data gathered by a HUPO plasma proteome collaborative
study. Nat Biotechnol
61. Bose et al. (2006) Phosphoproteomic analysis of Her2/neu signaling and
inhibition. Proc Natl Acad Sci U S A
62. Klammer et al. (2006) Effects of modified digestion schemes on the
identification of proteins from complex mixtures. Proteome Res
63. Ali et al. (2006) Plasma proteomic profiling: Search for lung cancer
diagnostic and early detection markers. Oncol Rep
64. Pasini et al. (2006) In-depth analysis of the membrane and cytosolic
proteome of red blood cells. Blood
65. Beck et al. (2006) Quantitative proteomic analysis of
post-translational modifications of human histones. Mol Cell Proteomics
66. Pawlik et al. (N/A) The evolving role of proteomics in the early
detection of breast cancer. Int J Fertil Womens Med
67. Diamandis et al. (2006) Serum Proteomic Profiling by Matrix-Assisted
Laser Desorption-Ionization Time-of-Flight Mass Spectrometry for Cancer
Diagnosis: Next Steps. Cancer Res
68. Pietrogrande et al. (2006) Decoding 2D-PAGE complex maps: Relevance to
proteomics. J Chromatogr B Analyt Technol Biomed Life Sci
69. Novikova et al. (2006) Identification of protein biomarkers for
schizophrenia and bipolar disorder in the postmortem prefrontal cortex
using SELDI-TOF-MS ProteinChip profiling combined with MALDI-TOF-PSD-MS
analysis. Neurobiol Dis
70. Azarkan et al. (2006) Affinity chromatography: A useful tool in
proteomics studies. J Chromatogr B Analyt Technol Biomed Life Sci
71. Reh et al. (2006) Evaluation of stationary phases for 2-dimensional
HPLC of proteins Part 1. Validation of commercial RP-columns. J Chromatogr
B Analyt Technol Biomed Life Sci
72. Kim et al. (2006) Simultaneous profiling of N-glycans and proteins
from human serum using a parallel-column system directly coupled to mass
spectrometry. J Chromatogr B Analyt Technol Biomed Life Sci
73. Decramer et al. (2006) Predicting the clinical outcome of congenital
unilateral ureteropelvic junction obstruction in newborn by urinary
proteome analysis. Nat Med
74. Denkert et al. (2006) Mass Spectrometry-Based Metabolic Profiling
Reveals Different Metabolite Patterns in Invasive Ovarian Carcinomas and
Ovarian Borderline Tumors. Cancer Res
75. Dai et al. (2006) Proteomic identification of differentially expressed
proteins associated with pollen germination and tube growth reveals
characteristics of germinated Oryza sativa pollen. Mol Cell Proteomics
76. Friedman et al. (2006) Multi-variable Difference Gel Electrophoresis
and Mass Spectrometry: A Case Study on TGF-beta and ErbB2 signaling. Mol
Cell Proteomics
77. H枚glund et al. (2006) MultiLoc: prediction of protein subcellular
localization using N-terminal targeting sequences, sequence motifs, and
amino acid composition. Bioinformatics
78. Millar et al. (2006) Recent surprises in protein targeting to
mitochondria and plastids. Curr Opin Plant Biol
79. Soloviev et al. (2006) Peptidomics: Bridging the gap between proteome
and metabolome. Proteomics
80. Borner et al. (2006) Comparative proteomics of clathrin-coated
vesicles. J Cell Biol
81. Mann et al. (2006) Functional and quantitative proteomics using SILAC.
Nat Rev Mol Cell Biol
82. Camerini et al. (2005) Proteomics approaches to study the redox state
of Cysteine containing proteins. Ann Ist Super Sanita
83. Koning et al. (2006) Computer-assisted mass spectrometric analysis of
naturally occurring and artificially introduced cross-links in proteins
and protein complexes. FEBS J
84. You et al. (2006) Proteomics with two-dimensional gel electrophoresis
and mass spectrometry analysis in cardiovascular research. Methods Mol Med
85. Brancia et al. (2006) Recent developments in ion-trap mass
spectrometry and related technologies. Expert Rev Proteomics
86. Huertas et al. (2006) Cyanide metabolism of Pseudomonas
pseudoalcaligenes CECT5344: role of siderophores. Biochem Soc Trans
87. Levery et al. (2005) Glycosphingolipid structural analysis and
glycosphingolipidomics. Methods Enzymol
88. Ye et al. (2006) Proteomic Profiling of Rat Bone Marrow Mesenchymal
Stem Cells Induced by 5-Azacytidine. Stem Cells Dev
89. Lo et al. (2006) The nucleolus: reviewing oldies to have new
understandings. Cell Res
90. Buschmann et al. (2006) Microtubule-Associated AIR9 Recognizes the
Cortical Division Site at Preprophase and Cell-Plate Insertion. Curr Biol
91. Gnatenko et al. (2006) Proteomic approaches to dissect platelet
function: one-half of the story. Blood
92. Yamazaki et al. (2006) Proteome analysis of an aerobic
hyper-thermophilic crenarchaeon, aeropyrum pernix K1. Mol Cell Proteomics
93. Pasini et al. (2006) In-depth analysis of the membrane and cytosolic
proteome of red blood cells. Blood
94. Dudley et al. (2006) Proteomic and microarray characterization of the
AggR regulon identifies a pheU pathogenicity island in enteroaggregative
Escherichia coli. Mol Microbiol
95. Dieterich et al. (2006) Selective identification of newly synthesized
proteins in mammalian cells using bioorthogonal noncanonical amino acid
tagging (BONCAT). Proc Natl Acad Sci U S A
96. Yu et al. (2006) Proteomic analysis of apical and basolateral plasma
membranes of rat renal collecting duct cells. Mol Cell Proteomics
97. Strong et al. (2006) Toward the structural genomics of complexes:
Crystal structure of a PE/PPE protein complex from Mycobacterium
tuberculosis. Proc Natl Acad Sci U S A
98. Forner et al. (2006) Quantitative proteomic comparison of rat
mitochondria from muscle, heart and liver. Mol Cell Proteomics
99. Keller et al. (2005) A uniform proteomics MS/MS analysis platform
utilizing open XML file formats. Mol Syst Biol
100. Barsnes et al. (2006) MassSorter: a tool for administrating and
analyzing data from mass spectrometry experiments on proteins with known
amino acid sequence. BMC Bioinformatics
----From Ion Channel Media Group：ttp://www.ionchannelmedia.com/websites.php
1. Gavin et al. (2006) Proteome survey reveals modularity of the yeast
cell machinery. Nature
2. Bonetta et al. (2006) Protein purification: proteomics at Harvard. Nature
3 .Hummon et al. (2006) From the genome to the proteome: uncovering
peptides in the Apis brain. Science
4. Chu et al. (2006) Sperm chromatin proteomics identifies evolutionarily
conserved fertility factors. Nature
5. Angers et al. (2006) Molecular architecture and assembly of the
DDB1-CUL4A ubiquitin ligase machinery. Nature
6. Foster et al. (2006) A Mammalian Organelle Map by Protein Correlation
Profiling. Cell
7. Liotta et al. (2006) Serum peptidome for cancer detection: spinning
biologic trash into diagnostic gold. J Clin Invest
8. Li et al. (2006) An intron with a constitutive transport element is
retained in a Tap messenger RNA. Nature
9. Miller et al. (2006) Semi-conservative DNA replication through
telomeres requires Taz1. Nature
10. Wang et al. (2006) Hsp90 Cochaperone Aha1 Downregulation Rescues
Misfolding of CFTR in Cystic Fibrosis. Cell
11. Olsen et al. (2006) Global, In Vivo, and Site-Specific Phosphorylation
Dynamics in Signaling Networks. Cell
12.Broadhead et al. (2006) Flagellar motility is required for the
viability of the bloodstream trypanosome. Nature
13. Gandhi et al. (2006) Analysis of the human protein interactome and
comparison with yeast, worm and fly interaction datasets. Nat Genet
14. Gilchrist et al. (2006) Quantitative proteomics analysis of the
secretory pathway. Cell
15. Petricoin et al. (2006) The blood peptidome: a higher dimesion of
information content for cancer biomarker discovery. Nat Rev Cancer
16. Schubert et al. (2006) Analyzing proteome topology and function by
automated multidimensional fluorescence microscopy. Nat Biotechnol
17. Roth et al. (2006) Global analysis of protein palmitoylation in yeast.
Cell
18. Collyda et al. (2006) Fuzzy Hidden Markov Models: A New Approach In
Multiple Sequence Alignment. Stud Health Technol Inform
19. Alt谋nta艧 et al. (2006) Efficient removal of albumin from human serum
by monosize dye-affinity beads. J Chromatogr B Analyt Technol Biomed Life
Sci
20. Chung et al. (2006) Genomics and proteomics: Emerging technologies in
clinical cancer research. Crit Rev Oncol Hematol
21. Kislinger et al. (2006) Global survey of organ and organelle protein
expression in mouse: combined proteomic and transcriptomic profiling. Cell
22. Batada et al. (2006) Stratus Not Altocumulus: A New View of the Yeast
Protein Interaction Network. PLoS Biol
23. Neher et al. (2006) Proteomic Profiling of ClpXP Substrates after DNA
Damage Reveals Extensive Instability within SOS Regulon. Mol Cell
24. Righetti et al. (2006) Real and imaginary artefacts in proteome
analysis via two-dimensional maps. J Chromatogr B Analyt Technol Biomed
Life Sci
25. Dorus et al. (2006) Genomic and functional evolution of the Drosophila
melanogaster sperm proteome. Nat Genet
26. Wilmes et al. (2006) Metaproteomics: studying functional gene
expression in microbial ecosystems. Trends Microbiol
27. Macek et al. (2006) Top-down protein sequencing and MS3 on a hybrid
linear quadrupole ion trap-orbitrap mass spectrometer. Mol Cell Proteomics
28. Hao et al. (2006) SNOSID, a proteomic method for identification of
cysteine S-nitrosylation sites in complex protein mixtures. Proc Natl Acad
Sci U S A
29. Salzano et al. (2005) Mass spectrometry for protein identification and
the study of post translational modifications. Ann Ist Super Sanita
30. Andersen et al. (2006) Organellar proteomics: turning inventories into
insights. EMBO Rep
31. Pozzi Mucelli et al. (2006) Proteomic studies on the white matter of
human brain. J Chromatogr B Analyt Technol Biomed Life Sci
32. Kashino et al. (2006) Preparation of membrane proteins for analysis by
two-dimensional gel electrophoresis. J Chromatogr B Analyt Technol Biomed
Life Sci
33. Mougeot et al. (2006) Gene Expression Profiling of Ovarian Tissues for
Determination of Molecular Pathways Reflective of Tumorigenesis. J Mol
Biol
34. Hinsby et al. (2006) A wiring of the human nucleolus. Mol Cell
35. Fukata et al. (2006) Epilepsy-related ligand/receptor complex LGI1 and
ADAM22 regulate synaptic transmission. Science
36. Carroll et al. (2006) Definition of the mitochondrial proteome by
measurement of molecular masses of membrane proteins. Proc Natl Acad Sci U
S A
37. Cho et al. (2006) Regulatory functions of nuclear hexokinase1 complex
in glucose signaling. Cell
38. Duchaine et al. (2006) Functional Proteomics Reveals the Biochemical
Niche of C. elegans DCR-1 in Multiple Small-RNA-Mediated Pathways. Cell
39. Savitski et al. (2006) ModifiComb: New proteomics tool for mapping
substochiometric post-translational modifications, finding novel types of
modifications and fingerprinting complex protein mixtures. Mol Cell
Proteomics
40. Haas et al. (2006) Optimization and use of peptide mass measurement
accuracy in shotgun proteomics. Mol Cell Proteomics
41. Chich et al. (2006) Statistics for proteomics: Experimental design and
2-DE differential analysis. J Chromatogr B Analyt Technol Biomed Life Sci
42. Fuentes et al. (2006) Solid phase proteomics: Dramatic reinforcement
of very weak protein-protein interactions. J Chromatogr B Analyt Technol
Biomed Life Sci
43. von Kriegsheim et al. (2006) Regulation of the Raf-MEK-ERK pathway by
protein phosphatase 5. Nat Cell Biol
44. Sprinzak et al. (2006) Characterization and prediction of
protein-protein interactions within and between complexes. Proc Natl Acad
Sci U S A
45. Veenstra et al. (2006) Global and targeted quantitative proteomics for
biomarker discovery. J Chromatogr B Analyt Technol Biomed Life Sci
46. Guerrier et al. (2006) Reducing protein concentration range of
biological samples using solid-phase ligand libraries. J Chromatogr B
Analyt Technol Biomed Life Sci
47. Gourion et al. (2006) A proteomic study of Methylobacterium extorquens
reveals a response regulator essential for epiphytic growth. Proc Natl
Acad Sci U S A
48. Dattelbaum et al. (2006) Surface-assisted laser desorption/ionization
mass spectrometry. Expert Rev Proteomics
49. Ji et al. (2006) A sample preparation process for LC-MS/MS analysis of
total protein drug concentrations in monkey plasma samples with antibody.
J Chromatogr B Analyt Technol Biomed Life Sci
50. Plowman et al. (2006) The proteomics of keratin proteins. J Chromatogr
B Analyt Technol Biomed Life Sci
51. Picariello et al. (2006) Proteomic study of muscle sarcoplasmic
proteins using AUT-PAGE/SDS-PAGE as two-dimensional gel electrophoresis. J
Chromatogr B Analyt Technol Biomed Life Sci
52. Pirondini et al. (2006) A 2-D liquid-phase chromatography for
proteomic analysis in plant tissues. J Chromatogr B Analyt Technol Biomed
Life Sci
53. et al. (2006) Mass spectrometrical verification of stomatin-like
protein 2 (SLP-2) primary structure. Proteins
54. Cheng et al. (2005) PDIP38 Associates with Proteins Constituting the
Mitochondrial DNA Nucleoid. J Biochem (Tokyo)
55. Dacheux et al. (2006) Human epididymal secretome and proteome. Mol
Cell Endocrinol
56. Hortin et al. (2006) The MALDI TOF Mass Spectrometric View of the
Plasma Proteome and Peptidome. Clin Chem
57. Snelling et al. (2006) Proteomic analysis and protein expression
during sporozoite excystation of Cryptosporidium parvum (coccidia,
Apicomplexa). Mol Cell Proteomics
58. Lee et al. (2006) Proteome analysis of human hair shaft: From protein
identification to posttranslational modification. Mol Cell Proteomics
59. Stead et al. (2006) Universal metrics for quality assessment of
protein identifications by mass spectrometry. Mol Cell Proteomics
60. States et al. (2006) Challenges in deriving high-confidence protein
identifications from data gathered by a HUPO plasma proteome collaborative
study. Nat Biotechnol
61. Bose et al. (2006) Phosphoproteomic analysis of Her2/neu signaling and
inhibition. Proc Natl Acad Sci U S A
62. Klammer et al. (2006) Effects of modified digestion schemes on the
identification of proteins from complex mixtures. Proteome Res
63. Ali et al. (2006) Plasma proteomic profiling: Search for lung cancer
diagnostic and early detection markers. Oncol Rep
64. Pasini et al. (2006) In-depth analysis of the membrane and cytosolic
proteome of red blood cells. Blood
65. Beck et al. (2006) Quantitative proteomic analysis of
post-translational modifications of human histones. Mol Cell Proteomics
66. Pawlik et al. (N/A) The evolving role of proteomics in the early
detection of breast cancer. Int J Fertil Womens Med
67. Diamandis et al. (2006) Serum Proteomic Profiling by Matrix-Assisted
Laser Desorption-Ionization Time-of-Flight Mass Spectrometry for Cancer
Diagnosis: Next Steps. Cancer Res
68. Pietrogrande et al. (2006) Decoding 2D-PAGE complex maps: Relevance to
proteomics. J Chromatogr B Analyt Technol Biomed Life Sci
69. Novikova et al. (2006) Identification of protein biomarkers for
schizophrenia and bipolar disorder in the postmortem prefrontal cortex
using SELDI-TOF-MS ProteinChip profiling combined with MALDI-TOF-PSD-MS
analysis. Neurobiol Dis
70. Azarkan et al. (2006) Affinity chromatography: A useful tool in
proteomics studies. J Chromatogr B Analyt Technol Biomed Life Sci
71. Reh et al. (2006) Evaluation of stationary phases for 2-dimensional
HPLC of proteins Part 1. Validation of commercial RP-columns. J Chromatogr
B Analyt Technol Biomed Life Sci
72. Kim et al. (2006) Simultaneous profiling of N-glycans and proteins
from human serum using a parallel-column system directly coupled to mass
spectrometry. J Chromatogr B Analyt Technol Biomed Life Sci
73. Decramer et al. (2006) Predicting the clinical outcome of congenital
unilateral ureteropelvic junction obstruction in newborn by urinary
proteome analysis. Nat Med
74. Denkert et al. (2006) Mass Spectrometry-Based Metabolic Profiling
Reveals Different Metabolite Patterns in Invasive Ovarian Carcinomas and
Ovarian Borderline Tumors. Cancer Res
75. Dai et al. (2006) Proteomic identification of differentially expressed
proteins associated with pollen germination and tube growth reveals
characteristics of germinated Oryza sativa pollen. Mol Cell Proteomics
76. Friedman et al. (2006) Multi-variable Difference Gel Electrophoresis
and Mass Spectrometry: A Case Study on TGF-beta and ErbB2 signaling. Mol
Cell Proteomics
77. H枚glund et al. (2006) MultiLoc: prediction of protein subcellular
localization using N-terminal targeting sequences, sequence motifs, and
amino acid composition. Bioinformatics
78. Millar et al. (2006) Recent surprises in protein targeting to
mitochondria and plastids. Curr Opin Plant Biol
79. Soloviev et al. (2006) Peptidomics: Bridging the gap between proteome
and metabolome. Proteomics
80. Borner et al. (2006) Comparative proteomics of clathrin-coated
vesicles. J Cell Biol
81. Mann et al. (2006) Functional and quantitative proteomics using SILAC.
Nat Rev Mol Cell Biol
82. Camerini et al. (2005) Proteomics approaches to study the redox state
of Cysteine containing proteins. Ann Ist Super Sanita
83. Koning et al. (2006) Computer-assisted mass spectrometric analysis of
naturally occurring and artificially introduced cross-links in proteins
and protein complexes. FEBS J
84. You et al. (2006) Proteomics with two-dimensional gel electrophoresis
and mass spectrometry analysis in cardiovascular research. Methods Mol Med
85. Brancia et al. (2006) Recent developments in ion-trap mass
spectrometry and related technologies. Expert Rev Proteomics
86. Huertas et al. (2006) Cyanide metabolism of Pseudomonas
pseudoalcaligenes CECT5344: role of siderophores. Biochem Soc Trans
87. Levery et al. (2005) Glycosphingolipid structural analysis and
glycosphingolipidomics. Methods Enzymol
88. Ye et al. (2006) Proteomic Profiling of Rat Bone Marrow Mesenchymal
Stem Cells Induced by 5-Azacytidine. Stem Cells Dev
89. Lo et al. (2006) The nucleolus: reviewing oldies to have new
understandings. Cell Res
90. Buschmann et al. (2006) Microtubule-Associated AIR9 Recognizes the
Cortical Division Site at Preprophase and Cell-Plate Insertion. Curr Biol
91. Gnatenko et al. (2006) Proteomic approaches to dissect platelet
function: one-half of the story. Blood
92. Yamazaki et al. (2006) Proteome analysis of an aerobic
hyper-thermophilic crenarchaeon, aeropyrum pernix K1. Mol Cell Proteomics
93. Pasini et al. (2006) In-depth analysis of the membrane and cytosolic
proteome of red blood cells. Blood
94. Dudley et al. (2006) Proteomic and microarray characterization of the
AggR regulon identifies a pheU pathogenicity island in enteroaggregative
Escherichia coli. Mol Microbiol
95. Dieterich et al. (2006) Selective identification of newly synthesized
proteins in mammalian cells using bioorthogonal noncanonical amino acid
tagging (BONCAT). Proc Natl Acad Sci U S A
96. Yu et al. (2006) Proteomic analysis of apical and basolateral plasma
membranes of rat renal collecting duct cells. Mol Cell Proteomics
97. Strong et al. (2006) Toward the structural genomics of complexes:
Crystal structure of a PE/PPE protein complex from Mycobacterium
tuberculosis. Proc Natl Acad Sci U S A
98. Forner et al. (2006) Quantitative proteomic comparison of rat
mitochondria from muscle, heart and liver. Mol Cell Proteomics
99. Keller et al. (2005) A uniform proteomics MS/MS analysis platform
utilizing open XML file formats. Mol Syst Biol
100. Barsnes et al. (2006) MassSorter: a tool for administrating and
analyzing data from mass spectrometry experiments on proteins with known
amino acid sequence. BMC Bioinformatics
