Reconstruction of Full-Length Isoforms from Splice Graphs
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Most alternative splicing events in human and other eukaryotic genomes are detected using sequence fragments produced by high throughput genomic technologies, such as EST sequencing and oligonu-cleotide microarrays. Reconstructing full-length transcript isoforms from such sequence fragments is a major interest and challenge for computational analyses of pre-mRNA alternative splicing. This chapter describes a general graph-based approach for computational inference of full-length isoforms.
