常用核酸和氨基酸代码

常用核酸和氨基酸代码



Amino Acids Table

Here is a list of the standard one-letter amino acid codes and their three-letter equivalents. The synonymous codons and their depiction in the IUB codes are shown. You should recognize that the codons following semicolons ( are not sufficiently specific to define a single amino acid even though they represent the best possible backtranslation into the IUB codes!




Symbol 3-letter Code Amino-acid Codons
A Ala Alanine GCT,GCC,GCA,GCG
B Asp,Asn Aspartic, Asparagine GAT,GAC,AAT,AAC
C Cys Cysteine TGT,TGC
D Asp Aspartic GAT,GAC
E Glu Glutamic GAA,GAG
F Phe Phenylalanine TTT,TTC
G Gly Glycine GGT,GGC,GGA,GGG
H His Histidine CAT,CAC
I Ile Isoleucine ATT,ATC,ATA
K Lys Lysine AAA,AAG
L Leu Leucine TTG,TTA,CTT,CTC,CTA,CTG
M Met Methionine ATG
N Asn Asparagine AAT,AAC
P Pro Proline CCT,CCC,CCA,CCG
Q Gln Glutamine CAA,CAG
R Arg Arginine CGT,CGC,CGA,CGG,AGA,AGG
S Ser Serine TCT,TCC,TCA,TCG,AGT,AGC
T Thr Threonine ACT,ACC,ACA,ACG
V Val Valine GTT,GTC,GTA,GTG
W Trp Tryptophan TGG
X Xxx Unknown
Y Tyr Tyrosine TAT,TAC
Z Glu,Gln Glutamic, Glutamine GAA,GAG,CAA,CAG
~undefined End Terminator TAA,TAG,TGA



Standard Genetic Code

U C A G
U UUU Phe F
UUC Phe F
UUA Leu L
UUG Leu L
UCU Ser S
UCC Ser S
UCA Ser S
UCG Ser S UAU Tyr Y
UAC Tyr Y
UAA Stop
UAG Stop
UGU Cys C
UGC Cys C
UGA Stop
UGG Trp W

C
CUU Leu L
CUC Leu L
CUA Leu L
CUG Leu L


CCU Pro P
CCC Pro P
CCA Pro P
CCG Pro P


CAU His H
CAC His H
CAA Gln Q
CAG Gln Q


CGU Arg R
CGC Arg R
CGA Arg R
CGG Arg R

A
AUU Ile I
AUC Ile I
AUA Ile I
AUG Met M


ACU Thr T
ACC Thr T
ACA Thr T
ACG Thr T


AAU Asn N
AAC Asn N
AAA Lys K
AAG Lys K


AGU Ser S
AGC Ser S
AGA Arg R
AGG Arg R

G
GUU Val V
GUC Val V
GUA Val V
GUG Val V


GCU ALA A
GCC ALA A
GCA ALA A
GCG ALA A


GAU Asp D
GAC Asp D
GAA Glu E
GAG Glu E


GGU Gly G
GGC Gly G
GGA Gly G
GGG Gly G





Genome Size and DNA Content


Genome Size
(base pairs x 109) Coding DNA (%)
Bacterium (E. coli) 0.004 100
Yeast (Saccharomyces) 0.009 70
Nematode (Caenorhabditis) 0.09 25
Fruitfly (Drosophila) 0.18 33
Newt (Triturus) 19.0 1.5 - 4.5
Human 3.5 9 - 27
Lungfish (Protopterus) 140.0 0.4 - 1.2
Flowering plant (Arabidopsis) 0.2 31
Flowering plant (Fritillaria) 130.0 0.02

Cavalier-Smith, T. (ed.) The Evolution of Genome size (Wiley, Chichester, 1985).



Nucleotides

The meaning of each symbol (GCG files), its complement, and the Staden file equivalents are shown below.



IUB/GCG Meaning Complement
A A T
C C G
G G C
T / U T A
M A or C K
R A or G Y
W A or T W
S C or G S
Y C or T R
K G or T M
V A or C or G B
H A or C or T D
D A or G or T H
B C or G or T V
X / N G or A or T or C
not G or A or T or C X