【资源】一些与基因组学学习相关的资料
丁香园论坛
2063
基因组学相关软件列表
1、基因组组装分析：phred, phd2fasta, phrap, consed, arachne, RePS
2、功能注释：glimmer, genewise, genscan, fgenesh, BGF, tRNAscan-SE, MicroRNA, sim4, InterproScan, GO, WEGO, Promoter 2.0, Disembl
3、重复序列：Repeatmasker, ReAS
4、比较基因组：cross_match, blastall, blastz, blat, Fasta, CAT, MUMmer, smith-waterman
5、表达(EST、芯片、蛋白)：cap3, BGI-EST analysis package, BGI-Array analysis package, BGI-Proteomics analysis package
6、分子进化：K-Estimator, codeml, yn00, clustalw
7、多态性：primer3, SNPdetector, polyphred, BGI-Variation analysis package
这些软件多时linux下工作的，可以免费获取
序列同源性比对资源
http://homepage.univie.ac.at/herbert.mayer/MainSIM.html
很好的链接
－omics组学关键词及主要杂志
Cancer Genomics－癌症基因组学 类Oncogenomics－癌基因组学
Chemical genomics－化学基因组学
Comparative genomics－比较基因组学
Epigenomics－表观基因组学
表观基因组学(epigenomics)则是在基因组水平上对表观遗传学改变的研究。
Evolutionary genomics－环境基因组学
Genomics－基因组学
Glycomics－糖组学
Metabolomics/nomics－代谢组学
Metagenomics－宏基因组学
Oncogenomics－癌基因组学
Pharmacogenomics－药物基因组学
药物基因组学(pharmacogenomics)作为人类基因组学研究成果的直接应用, 主要研究人类基因的遗传学多态性对药物反应(药物效应和不良反应)的影响
Population genomics－群体基因组学
Proteomics－蛋白质组学
Systems biology－系统生物学
Transcriptomics-转录组学
重要的网站：
http://www.nature.com/omics/index.html 是Nature及其系列杂志有关组学研究的综合
Biology has become an increasingly data-rich subject, and NPG is committed to helping the community mine those data for novel insight. Many of the emerging fields of large-scale, data-rich, biology are designated by the suffix "-omics" added onto previously used terms. The importance to the life science community as a whole of such large-scaleapproaches is reflected in the huge number of citations to many of the key papers in these fields; the human and mouse genome papers being the most obvious examples. The Omics Gateway provides life scientists a convenient portal into publications relevant to large-scale biology from journals throughout NPG. By organizing our papers and web focus projects on large-scale biology into this comprehensive, regularly updated, one-stop web portal, we hope to help you quickly reach the resources you need to study the -ome of your choice and to keep you up-to-date with most significant research in that area.
http://www.sciencemag.org/
http://pubs.acs.org/ Proteomics
http://www3.interscience.wiley.com/ Journal of Proteomics
www.genome.org Genome Research
http://genomebiology.com/ genome biology
http://nar.oxfordjournals.org/ nucleic acid research
由于时间有限，整理的不全，如有不足，希望大家继续补充。
大家觉得好，要顶贴哦！！！！
冷泉港实验室基因组学教程（绝对经典）
Cold Spring habor[http://www.cshl.edu/] Genomics courses
下载地址: http://nucleus.cshl.org/agsa/presentations.html
1、基因组组装分析：phred, phd2fasta, phrap, consed, arachne, RePS
2、功能注释：glimmer, genewise, genscan, fgenesh, BGF, tRNAscan-SE, MicroRNA, sim4, InterproScan, GO, WEGO, Promoter 2.0, Disembl
3、重复序列：Repeatmasker, ReAS
4、比较基因组：cross_match, blastall, blastz, blat, Fasta, CAT, MUMmer, smith-waterman
5、表达(EST、芯片、蛋白)：cap3, BGI-EST analysis package, BGI-Array analysis package, BGI-Proteomics analysis package
6、分子进化：K-Estimator, codeml, yn00, clustalw
7、多态性：primer3, SNPdetector, polyphred, BGI-Variation analysis package
这些软件多时linux下工作的，可以免费获取
序列同源性比对资源
http://homepage.univie.ac.at/herbert.mayer/MainSIM.html
很好的链接
－omics组学关键词及主要杂志
Cancer Genomics－癌症基因组学 类Oncogenomics－癌基因组学
Chemical genomics－化学基因组学
Comparative genomics－比较基因组学
Epigenomics－表观基因组学
表观基因组学(epigenomics)则是在基因组水平上对表观遗传学改变的研究。
Evolutionary genomics－环境基因组学
Genomics－基因组学
Glycomics－糖组学
Metabolomics/nomics－代谢组学
Metagenomics－宏基因组学
Oncogenomics－癌基因组学
Pharmacogenomics－药物基因组学
药物基因组学(pharmacogenomics)作为人类基因组学研究成果的直接应用, 主要研究人类基因的遗传学多态性对药物反应(药物效应和不良反应)的影响
Population genomics－群体基因组学
Proteomics－蛋白质组学
Systems biology－系统生物学
Transcriptomics-转录组学
重要的网站：
http://www.nature.com/omics/index.html 是Nature及其系列杂志有关组学研究的综合
Biology has become an increasingly data-rich subject, and NPG is committed to helping the community mine those data for novel insight. Many of the emerging fields of large-scale, data-rich, biology are designated by the suffix "-omics" added onto previously used terms. The importance to the life science community as a whole of such large-scaleapproaches is reflected in the huge number of citations to many of the key papers in these fields; the human and mouse genome papers being the most obvious examples. The Omics Gateway provides life scientists a convenient portal into publications relevant to large-scale biology from journals throughout NPG. By organizing our papers and web focus projects on large-scale biology into this comprehensive, regularly updated, one-stop web portal, we hope to help you quickly reach the resources you need to study the -ome of your choice and to keep you up-to-date with most significant research in that area.
http://www.sciencemag.org/
http://pubs.acs.org/ Proteomics
http://www3.interscience.wiley.com/ Journal of Proteomics
www.genome.org Genome Research
http://genomebiology.com/ genome biology
http://nar.oxfordjournals.org/ nucleic acid research
由于时间有限，整理的不全，如有不足，希望大家继续补充。
大家觉得好，要顶贴哦！！！！
冷泉港实验室基因组学教程（绝对经典）
Cold Spring habor[http://www.cshl.edu/] Genomics courses
下载地址: http://nucleus.cshl.org/agsa/presentations.html
