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疾病及处理

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Determination of Co-Receptor Usage of HIV-1

In addition to CD4, HIV-1 uses chemokine receptors for entry in their target cells. The most important chemokine receptors in this respect are β-chemokine receptor 5 (CCR5) and α-chemokine receptor 4 (CXCR4). Coreceptor usage is an important feature of the biological phenotype of HIV-1 varia ...

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Phenotypic Characterization of Blood Monocytes From HIV-Infected Individuals

Monocytes play an important, yet only partly understood, role in HIV-1 pathogenesis. Two main subsets of peripheral blood monocytes have been described; the major subset of monocytes are phenotypically characterized as being CD14hi/CD16−, and a minor subset (5–15% of total monocytes in he ...

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A Yeast Recombination-Based Cloning System to Produce Chimeric HIV-1 Viruses and Express HIV-1 Genes

Differential phenotypes or properties of HIV-1 gene products in primary virus isolates are difficult to assess due to interference by the high degree of sequence variation across the entire genome. Thus, chimeric viruses provide a powerful tool to study the function of single gene products ...

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Methods to Determine HIV-1 Ex Vivo Fitness

The fitness of human immunodeficiency virus type-1 (HIV-1) appears to be an important piece of the puzzle in understanding the global HIV-1 epidemic and disease progression in infected individuals. We have developed a dual infection/competition assay followed by a sensitive heterodu ...

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PCR Amplification, Cloning, and Construction of HIV-1 Infectious Molecular Clones From Virtually Full-Length HIV-1 Genomes

The development of mixtures of highly processive and high-fidelity thermostable DNA polymerases has enabled the routine recovery of DNA sequences in excess of 25 kb generated by polymerase chain reaction. This powerful tool has been instrumental in the ability to recover virtually ful ...

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Amplification and Cloning of Near Full-Length HIV-2 Genomes

The genomes of human immunodeficiency virus type 2 (HIV-2), like those of HIV-1, are not only extremely variable but are also highly recombinogenic (1–5). Determination of subtypes based on partial genomes cannot predict the subtype classification of other regions of the genome owing to the fr ...

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Growth and Manipulation of a Human T-Cell Leukemia Virus Type 2 Full-Length Molecular Clone

In retrovirus research, the generation of an infectious molecular clone is a landmark event, opening up new avenues of research using the cloned virus. A full-length proviral plasmid clone of the human T-cell leukemia virus (HTLV) makes possible reproducible viral genetic studies. Howev ...

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Construction and Analysis of Genomic, Full-Length Infectious Foamy Virus DNA Clones

The molecular engineering of recombinant plasmid DNA clones containing the full-length and replication-competent feline foamy (retro)virus (FFV) proviral genome is described. The methods used to combine subgenomic FFV DNA fragments can be applied to other retrovirus genomes, r ...

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Molecular Characterization of Proteolytic Processing of the Gag Proteins of Human Spumaretrovirus

Molecular characterization of proteolytic processing of the human spumaretrovirus (HSRV) Gag proteins and the precise determination of cleavage sites was performed. For in vitro processing of recombinant HSRV Gag proteins, a recombinant enzymatically active HSRV protease w ...

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Assessing the Relative Efficacy of Antiretroviral Activity of Different Drugs on Macrophages

HIV-infected monocyte/macrophage-derived cells are believed to play a major role in the spread of HIV through the body. Not only are fresh monocytes and more differentiated macrophages relatively insensitive to the cytopathic effect of HIV, but once infected they can efficiently infe ...

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Gene Expression Profiling of HIV-1 Infection Using cDNA Microarrays

To illustrate the methods employed in gene expression profiling using cDNA microarrays, infection of CD4+ T cell lines with HIV-1LAI is used to identify expression changes relevant to in vitro HIV-1 infection. Cell lines are infected at a high multiplicity of infection to ensure a population of ...

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Determination of DC-SIGN and DC-SIGNR Repeat Region Variations

DC-SIGN and DC-SIGNR efficiently bind HIV-1 and other viral as well as nonviral pathogens and assist either cis or trans infection. Both are type II transmembrane proteins that consist of an N-terminal cytoplasmic domain, a repeat region consisting of seven 23-amino-acid tandem repeats, and a C ...

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Electrophysiological Measurements on Reconstituted Outer Membranes

Membranes, in general, constitute the boundary between a cell or a cell compartment and its environment. They are composed of (glyco)lipids and (glyco)proteins, function as permeability barriers, maintain constant ion gradients across the membrane, and guarantee a controlled stea ...

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Purification of Clostridium botulinum Type A Neurotoxin

Botulinum neurotoxins produced by strains of the spore-bearing bacterium Clostridium botulinum have long been known to cause a distinctive paralytic disease in humans and animals (1). In recent years, injection of crystalline botulinum toxin type A has been demonstrated to provide re ...

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Shiga Toxins

The Shiga family of toxins is comprised of a group of genetically and functionally related molecules whose original family member was described 100 yr ago. Up until the early 1980s this group of toxins was little more than a scientific curiosity without a clear role in disease pathogenesis. Howev ...

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Genetic Construction, Expression, and Characterization of Diphtheria Toxin-Based Growth Factor Fusion Proteins

The fusion protein toxins that have been described are generally composed of the catalytic and transmembrane domains of a bacterial toxin (e.g., diphtheria toxin or Pseudomonas exotoxin A) to which a polypeptide hormone, growth factor, or single-chain antibody (scFv) is genetically fus ...

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Isolation and Detection of Microcystins and Nodularins, Cyanobacterial Peptide Hepatotoxins

Some species and strains within the freshwater cyanobacterial (blue-green algal) genera Microcystis, Oscillatoria (also known as Planktothrix), Anabaena, and Nostoc are known to produce cyclic heptapeptide liver toxins, microcystins. Closely related toxic cyclic pent ape pt ...

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Structure-Function Analysis of Cysteine-Engineered Entomopathogenic Toxins

The availability of bacterial toxin genes and, in many cases, their atomic structures permits, through properly designed structure-function studies, the precise mapping of the molecular determinants of their activity. The results of such studies are of particular importance for the ...

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Use of Fourier-Transformed Infrared Spectroscopy for Secondary Structure Determination of Staphylococcal Pore-Forming Toxins

Pathogenic strains of Staphylococcus aureus produce a large number of exotoxins (1). Among these a family of single-chain leukotoxins of 32–34 kDa has been identified. They include α-toxin (or α-hemolysin), which is probably one of the best studied toxins (2), and a large group of bicomponent tox ...

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The Use of Fluorescence Resonance Energy Transfer to Detect Conformational Changes in Protein Toxins

When a fluorophore absorbs a photon, an electron is excited to a higher energy level. This excited state electron returns to its ground state by one of two competing processes. In radiative de-excitation, a brief relaxation time (about 10-12 s) is followed by the electron’s return to the ground state ac ...

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