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Using MycDB on the World-Wide Web

MycDB 1s an integrated mycobacterial database. This means that it contains information on all aspects of mycobacteria, whether immunology, metabolism, or the researchers working on mycobacteria. For historical reasons, the starting point has been molecular biology, but other asp ...

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Preparation of Cell-Wall Fractions from Mycobacteria

Research extending over 50 years has implicated various components of the mycobacterial cell-wall matrix in many host responses associated with tuberculosis and other mycobacterioses (1). The observed responses originally included granuloma formation, high-titer IgG ant ...

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Preparation of Cell-Free Extracts from Mycobacteria

Much work in the mycobacterial field has focused on the identification and characterization of antigenic proteins (1,2); many have now been identified and assigned a function; for example, the immunodommant 65kDa antigen of Mycobacterzum tuberculosis has been identified as a chaper ...

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Extraction of RNA from Mycobacteria

Genetic characterization of mycobacteria has advanced considerably in the last decade. The identificatlon of putative virulence genes and their products has prompted investlgation of how expression of these factors is controlled during infection. Regulation of virulence de ...

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Pulsed Field Gel Electrophoresis for Mycobacteria

The introduction of pulsed field gel electrophoresis (PFGE) was a major breakthrough in the field of genome research (1), allowing the analysis of whole procaryotic and eucaryotic chromosomes. This became possible by a combination of new techniques for the extraction of intact chromoso ...

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Nucleic-Acid Extraction: Plasmid/Cosmid DNA

Characterization of recombinant mycobacterial genes has been complicated by the lack of a rapid and efficient method to prepare plasmid and cosmid DNA directly from mycobacteria. Traditionally, plasmids and cosmids had to be recovered from mycobacteria and propagated in Escheric ...

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Isolation of Genomic DNA from Mycobacteria

The Mycobacterium genus is comprised of over 30 mdivldual species with a large majority being saphrophytes. However, research on these bacteria has focused primarily on the pathogens Mycobacterium bow, Mycobacterium tuberculosis, and Mycobacterium leprae, and opportunistic ...

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The Use of Luciferase-Reporter Phage for Antibiotic-Susceptibility Testing of Mycobacteria

Prior to this decade, routine antibiotic-susceptibility testing (AST) of Mycobacterium tuberculosis clinical isolates was not advocated (1) This policy was predicated on the following assumptions: 1. The prevalence ofantibiotic resistance is low,

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Computer Analysis of IS6110 RFLP Patterns of Mycobacterium tuberculosis

The discovery of polymorphic, repetitive DNA in the Mycobacterzum tuberculosis complex has led to many methods for differentiating clinical isolates belonging to this spectes of pathogenic bacteria. The most widely used method 1s restriction fragment-length polymorphism (R ...

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Neoplastic Transformation Assays

Although a tumor cell can be distinguished from its normal counterpart by a wide range of phenotypic alterations, only a few of these properties provide useful indicators of malignant transformation. These include changes in cellular morphology, decreased dependence on serum growth ...

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Using Retroviral Vectors to Express SV40 Tumor Antigens

Retroviral vectors for polyomavirus tumor antigens, including SV40 large and small tumor antigens (SVT), have been extensively utilized to study the function of these proteins in a wide range of cell types. Properties of retroviruses that make them particularly efficient vectors incl ...

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Methods to Assess Inhibition of Adipocyte Differentiation by SV40 Large T Antigen

Murine preadipocyte cell lines represent a convenient and informative model system for determining whether the mechanisms underlying oncogene-induced neoplastic transformation and the suppression of terminal differentiation are related. Preadipocytes transfor ...

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Biology of p53 and SV40 Large T Association

p53 was discovered because of its capacity to bind to SV40 large T antigen (SVLT) in transformed cell lines (1,2). It is a phosphorylated, 393 amino acid protein, with five blocks of sequences that are highly conserved throughout evolution. Early research showed that p53 could act as a dominant oncog ...

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SV40-Mediated Immortalization

Normal cells in culture divide a defined number of times before reaching replicative senescence (1). The number of divisions that cells can undergo varies with the species of animal and tissue from which the cells are derived. Cells that have exceeded their typical number of divisions are said to h ...

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In situ Electroporation for the Measurement of c-Ras Activation by SVLT

Simian virus 40 large-tumor antigen (SVLT) is a largely nuclear oncogene product (1,2). Evidence from a number of laboratories has indicated that the interaction between cellular nuclear antioncogenes, such as the retinoblastomasusceptibility gene product family (Rb) and p53, med ...

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Binding of SV40 Large T Antigen to the Retinoblastoma Susceptibility Gene Product and Related Proteins

SV40 large T antigen (T-ag) is an oncoprotein that induces transformation of cells through the binding and inactivation of the p53 tumor suppressor protein and the retinoblastoma family of proteins. This chapter focuses on the interaction of T-ag with the product of the retinoblastoma susc ...

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Role of SV40 Small t in Cell Lysis, Transformation, and Signaling

Simian virus 40 small t antigen (st) is encoded on a differentially spliced transcript of the SV40 early region. It shares its aminoterminal 82 amino acids with the large T antigen and contains a unique cysteine-rich carboxyterminal half. Small t mutant viruses were obtained originally as dele ...

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Cytotoxic T Lymphocytes in SV40 Infections

Simian virus 40 (SV40) infects monkeys and persists in the latent form in the kidneys of this natural host. However, in nonpermissive hosts, such as rodents, the virus induces neoplasia and the outcome is controlled by the immune response of the host (1,2). Virus-neutralizing antibodies are resp ...

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Propagation of Wild-Type and Mutant SV40

Simian virus 40 (SV40) is routinely propagated in established kidney cell lines derived from the African green monkey (1). Generally, one of two cell lines, BSC-1 or CV1, are used for this purpose (2,3). Both of these cell lines are easy to maintain in culture and can be readily frozen and recovered from frozen ...

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Detection of SV40 DNA Sequences in Human Tissue

Several recent investigations using polymerase chain reaction (PCR) detection methods have identified SV40-like DNA sequences in human neoplasms, particularly choroid plexus tumors (1), ependymomas (1), mesotheliomas (2), and osteosarcomas (3,4). Difficulties have arisen ...

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