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Automated Imaging of Visual Recognition Memory in Larval Zebrafish

This protocol describes an assay for measuring visual recognition memory in larval zebrafish using an automated imaging system. Dubbed the “context recognition assay,” this assay measures the responses of larvae to familiar and unfamiliar visual stimuli displayed on an LCD screen be ...

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Nocifensive Behavior in Adult and Larval Zebrafish

A long-standing debate on whether fish can feel pain is coming to a close as evidence gathers regarding the existence of nociceptive mechanisms in the peripheral and central nervous system of these vertebrates, as well as nocifensive behavior that can be altered by pharmacological treatme ...

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Use of a Split Depth and Visual Cliff Apparatus to Measure the Diving Response in Zebrafish

The open tank diving test and the light/dark test are commonly used to assess anxiety-like behavior in zebrafish. The open tank test exerts relatively weak control over behavior, and uses vertical locomotion as its primary measure. The light/dark test exerts relatively strong control over b ...

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Adapting the Open Field Test to Assess Anxiety-Related Behavior in Zebrafish

The open field test is a well-established paradigm for assaying anxiety-related behaviors and has been successfully employed in a broad range of species. We describe an adaptation of this test for the zebrafish, which is increasingly widely used as a model for anxiety-related behavior and st ...

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Behavioral and Pharmacological Aspects of Anxiety in the Light/Dark Preference Test

Some teleost fish present scototaxis, a tendency to search for dark places and avoid brightly lit spaces. In zebrafish, it has been proposed that scototaxis (preference for dark environments) is a model of anxiety. In this chapter, we discuss some evidence regarding that proposal, and present a s ...

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Mammalian Target of Rapamycin

Mammalian target of rapamycin (mTOR) is a serine/threonine protein kinase known to merge extracellular instructions with information about cellular metabolic resources and control the rate of anabolic and catabolic processes accordingly. In neurons, mTOR has been implicated in ...

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Trafficking of Trk Receptors

Endocytosis and trafficking of Trk receptors are central to their functions in neuronal development. Neurotrophin binding to Trk receptors induces endocytosis of Trk receptors as a ligand–receptor complex in axon terminals. This endocytic ligand–receptor complex, termed the s ...

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Diacylglycerol Kinase (DGK) as a Regulator of PKC

Diacylglycerol kinase (DGK) is a lipid kinase but not protein kinase. However, the enzyme regulates many protein kinases including PKC, PI4P-Kinase, and mTOR by reducing the amount of diacylglycerol and producing phosphatidic acid. To date, ten mammalian DGKs have been cloned and divided i ...

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Imaging Oscillations of Protein Kinase C Activity in Cells

The protein kinase C (PKC) family contains ten members that share a catalytic core but differ in the composition of their regulatory modules. The conventional PKCs are a subfamily whose regulatory domains bind to Ca2+ and to the lipid second messenger diacylglycerol and thus they are activated ...

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Imaging PKA Activation Inside Neurons in Brain Slice Preparations

Cyclic-AMP dependent protein kinase (PKA) is present in most branches of the living kingdom, and as an example in the nervous system where PKA integrates the cellular effects of various neuromodulators. The recent development of fluorescence resonance energy transfer (FRET) biosens ...

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Assays for Pten-Induced Novel Kinase 1 (PINK1) and Leucine-Rich Repeat Kinase 2 (LRRK2), Kinases Associated with Parkinsons Disease

PTEN-induced novel kinase 1 (PINK1) and leucine-rich repeat kinase 2 (LRRK2) are two protein kinases associated with recessive and dominant forms of parkinsonism, respectively. Mutations in PINK1 cause loss of protein function whereas mutations in LRRK2 are less easily defined but, in s ...

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MuSK: A Kinase Critical for the Formation and Maintenance of the Neuromuscular Junction

Muscle-specific kinase (MuSK) is a RTK that is specifically expressed in skeletal muscle fibers and critical for the formation and maintenance of the neuromuscular junction (NMJ), a peripheral synapse formed between motoneurons and muscle fibers (1, 2). The acetylcholine receptors ( ...

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Cortical Neurons Culture to Study c-Jun N-Terminal Kinase Signaling Pathway

Excitotoxicity via N-methyl-d-aspartate receptors (NMDA-r) is a key mechanism of neurodegeneration following ischemia and other brain pathologies. We here describe the use of a fast, reliable and easily reproducible in vitro model of excitotoxicity induced with NMDA stimulation ...

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Large-Scale Protein Phosphorylation Analysis by Mass Spectrometry-Based Phosphoproteomics

Protein phosphorylation is one of the key mechanisms controlling cellular signaling networks. Due to the low abundance of phosphorylated proteins and weaker ionization efficiency of phosphopeptides during mass spectrometric analyses, it is highly required to remove abundant ...

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Phos-tag Affinity Electrophoresis for Protein Kinase Profiling

Protein kinase profiling can provide a basis for understanding the molecular origins of diseases and, potentially, for developing tools for therapeutic intervention. It is therefore very important to develop advanced experimental procedures for convenient and accurate dete ...

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Visualization of Protein Kinase Activities in Living Cells

Protein kinases are key modulators of intracellular signal transduction cascades, which determine various events in neuronal cells such as replication and differentiation. For many years, protein kinases were �analyzed mostly by biochemical methods, which could handle the cel ...

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Utilizing the Zebrafish Neurophenome Project (ZNP) Database for Analyses of Complex Neurophenotypes in Zebrafish Models

As the rate of biomedical discovery is rising exponentially, electronic databases have become particularly effective in organizing and sharing scientific knowledge. Due to a well-characterized genome, robust behavioral responses and physiological similarity to humans, t ...

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Western Blotting Assay for Egr-1 Immediate Early Gene in Brain Tissue of Zebrafish Applied to Neuroethological Study

Egr-1 (also known as zif268, Krox-24, NGFI-A, and ZENK) has been one of the most widely immediate early genes used to map specific neuronal populations activated during behavior in mammals and birds. However, the use of egr-1 mapping technique in nontraditional model systems depends on the evolut ...

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Rapid Method for Acute Intracerebroventricular Injection in Adult Zebrafish

The technique of intracerebroventricular (i.c.v.) injection is a useful neuroethological tool for studying the central actions of drugs on behavior of conscious animals because many drugs do not cross the blood–brain barrier, which limits the extent of drug action to the CNS. In this chapter ...

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Assessing Epilepsy-Related Behavioral Phenotypes in Adult Zebrafish

Over the past decades, zebrafish have been presented as a novel and valuable tool for modeling complex human diseases. Epilepsy is a serious brain disorder with multiple genetic and environmental causes. Our poor understanding of its pathogenesis requires novel paradigms and model org ...

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