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Cytogenetic Challenge Assays for Assessment of DNA Repair Capacities

Different challenge assays have been used to investigate cellular responses following exposure to DNA damaging agents. Our protocol uses X- or γ-rays or ultraviolet light to challenge cells to repair the induced damage, and chromosome aberrations as a biomarker to indicate DNA repair pro ...

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Evaluating the Delayed Effects of Cellular Exposure to Ionizing Radiation

A number of ongoing delayed effects have now been described in the progeny of an irradiated cell. These are grouped under the rubric of radiation induced genomic instability. Perhaps the best characterized is the dynamic production of chromosomal rearrangements in some clonally expand ...

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Detection of DNA Strand Breaks by Flow and Laser Scanning Cytometry in Studies of Apoptosis and Cell Proliferation (DNA Replication)

Extensive fragmentation of nuclear DNA occurs during apoptosis, and the presence of DNA strand breaks is considered to be a marker of the apoptotic mode of cell death. This chapter describes methods to label in situ DNA strand breaks with fluorochromes for detection by flow or laser scanning cyto ...

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Aggregation of Embryos and Embryonic Stem Cells

The human genome has been almost completely sequenced, and at least 30,000 genes have been found (1). Systematic studies of gene expression patterns by using cDNA microarrays have provided a powerful approach to molecular dissection of cells and tissues by comparing expression levels of te ...

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Knockin Approaches

Molecular genetic approaches toward the study of gene function in mice have traditionally relied on either overexpression or gene ablation using transgenic or knockout mouse strategies, respectively. More recently, the knockin approach, which often combines features of both tec ...

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Andenovirus-Mediated Gene Transfer

The injection of a recombinant adenoviral vector into the tail vein of a mouse results in highly preferential infection of the liver and subsequent liver-specific expression of the genes that are inserted into the adenoviral backbone. These characteristics of systemic adenovirus inj ...

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Random ENU Mutagenesis

Mouse models play an important role in the elucidation of molecular pathways underlying human disease. Mutations in mouse can be generated by a variety of techniques including those using inducing agents such ionizing radiation or chemicals and those that involve genetic manipulati ...

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Autopsy and Histologic Analysis of the Transgenic Mouse

Ttransgenic and knockout mice often show phenotypes that differ from our expectations. Therefore, it is important to carry out a complete pathologic examination using both macroscopic and microscopic analysis. It should be noted that, apart from (un)expected phenotypes caused dir ...

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In Vitro Fertilization/Cryopreservation

The mouse has become the most profound model system for investigating the genetics and pathogenetics of human diseases. A huge number of new mouse strains has arisen, and much effort has been expended to increase the number of suitable mouse models. In nearly all animal facilities, the maintenan ...

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Transgene Design

The application of transgenesis has increased exponentially since its introduction in the early 1980s, and it is still one of the most powerful methods to study gene function. As approaches to solve scientific problems became more complex, transgene design evolved alongside. At this mome ...

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Generating Conditional Mouse Mutants via Tetracycline-Controlled Gene Expression

With the tetracycline (Tc)-controlled gene expression system (Tet system), an experimental approach has been developed that permits alteration of individual gene activities in complex genetic systems in a truly conditional fashion, i.e., it is temporally defined, quantitative, a ...

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Manipulating Large Insert Clones for Transgenesis

The use of large genomic clones for transgenesis is necessary when the gene to be expressed is too large to be accommodated in a plasmid-based vector. Large insert clones can be produced with the P1 bacteriophage (P1) (1), P1 artificial chromosome (PAC) (2), bacterial artificial chromosome (BAC) (3 ...

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Gene Targeting in Mouse Embryonic Stem Cells

Gene targeting in mouse embryonic stem cells is now a well-established technique that is widely used to create animal models for human disease or to study gene function at the level of the whole animal. The purpose of this chapter is to provide a detailed protocol to investigators without previous ex ...

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Reporter Molecules in Genetically Engineered Mice

Reporter molecules are commonly used in transgenic mice to follow in vivo gene expression patterns through all developmental stages of the life cycle in all tissues. Numerous reporters are available for use in transgenic mice. The selection of a particular marker for gene expression will af ...

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The AMPS Package for Multiple Protein Sequence Alignment

AMPS (Alignment of Multiple Protein Sequences) is a set of programs for the multiple alignment of protein sequences. The programs build on the sequence comparison technique introduced in 1970 by Needleman and Wunsch (1). The Needleman and Wunsch algorithm when supplied with two protein seq ...

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The Use of Maternal Plasma for Prenatal RhD Blood Group Genotyping

Alloimmunization to the blood group antibody anti-RhD (anti-D) is the most common cause of hemolytic disease of the fetus and newborn. Knowledge of fetal D type in women with anti-D makes management of the pregnancy much easier and avoids unnecessary procedures in those women with a D-negative fe ...

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MutSDNA Interactions and DNase Protection Analysis with Surface Plasmon Resonance

Elucidation of the mechanisms of recognition of mispaired DNA by MutS and subsequent repair by the multicomponent mismatch repair machinery presents a fascinating challenge (1). ATP binding or hydrolysis are implicated in several steps of the process, including enabling MutS to diss ...

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Repair of A/G and A/8-oxoG Mismatches by MutY Adenine DNA Glycosylase

Cellular and organism aging have been correlated with accumulated DNA damage (1,2). 8-oxo-7,8-dihydrodeoxyguanine (8-oxoG or GO) is one of the most stable products of oxidative DNA damage. The formation of GO in DNA, if not repaired, can lead to misincorporation of A opposite to the GO lesion and resu ...

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Assays for the Repair of Oxidative Damage by Formamidopyrimidine Glycosylase (Fpg) and 8-)Oxoguanine DNA Glycosylase (OGG-1)

Oxidative damage produced by endogenously and exogenously generated reactive oxygen species (ROS) has been implicated in mutagenesis and carcinogenesis and may play an important role in the pathogenesis of aging (1). Among ROS, the hydroxyl radical is highly reactive, producing a var ...

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Detection and Quantitation of Uracil DNA Glycosylase Activity

One of the main determining factors for maintaining the informational integrity of the DNA genomes in all organisms is the efficiency of repair of DNA lesions. DNArepair mechanisms have evolved to counteract the deleterious effects of DNA damage. One such repair mechanism is Base Excision R ...

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