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Using Microinjection of Xenopus Oocytes to Express and Optimize Ribozymes In Vivo

Although it appears to be relatively easy to design ribozymes that cleave their targets and produce detectable cleavage products in vitro, especially when both molecules are quite small, the detection of cleavage products in viva has been remarkably difficult. It is generally assumed th ...

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Optimization of Lipid-Mediated Ribozyme Delivery to Cells in Culture

Ribozymes have considerable potential as agents to modify gene expression. Strategies have recently been reported for modifying synthetic hammerhead ribozymes to render them nuclease-resistant while retaining catalytic activity (1). Modified ribozymes therefore offer ...

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Retroviral Delivery and Anti-HIV Testing of Hammerhead Ribozymes

Successful ribozyme-mediated gene therapy for HIV infection has to take into account several factors: 1. The therapeutic gene must interfere with or shut down the expression of essential viral genes. 2. This re

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Clinical Aspects of Ribozymes as Therapeutics in Gene Therapy

By June 1995, 112 gene therapy trials had been approved by the NIH Recombinant DNA Advisory Committee (RAC) in the US, involving 500 actual, planned, or projected patients (1–3). Marking trials comprise roughly 20% (25 in total) of all approved studies, while the remainder are considered to have ther ...

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Hairpin Ribozyme Gene Therapy for AIDS

Acquired immune deficiency syndrome (AIDS) is a deadly disease that is the pathological consequence of infection with human immunodeficiency virus (HIV). The virus is spread via body fluids, and infection results in progressive immune dysfunction, most notably a loss of CD4+ cells, lead ...

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Computer Analysis of the Conservation and Uniqueness of Ribozyme-Targeted HIV Sequences

Ribozymes are currently being developed as therapeutic agents against AIDS (1,2). Successful cleavage of the mRNAs produced by HIV or the HIV genome itself could produce improvement by significantly reducing the patients’ viral burden. However, choosing the appropriate target sites ...

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Selection of Accessible Sites for Ribozymes on Large RNA Transcripts

Many studies of oligonucleotide binding and catalysis involve small nucleic acid targets with secondary and tertiary structures of little complexity. However, the therapeutic target of antisense oligonucleotides and hammerhead ribozymes, large RNAs, are rich in structures, ...

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Chemical Synthesis, Analysis, and Purification of Ribozymes

The chemical synthesis of RNA, like DNA, is carried out in the 3′ to 5′ direction to take advantage of the high chemical reactivity of the 5′-hydroxyl group. Solid-phase chemistry currently provides the most effective means for the scale-up of RNA synthesis. The biological activity of chemically sy ...

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Selection of Efficient Ribozyme Cleavage Sites in Target RNAs

The identification of cleavage sites for ribozymes within a particular target RNA exclusively on the basis of sequence informatlon often leads to disappointing failures. Even prediction of secondary structures of the target RNA by computer modeling with a more or less exact prediction ...

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A Practical Method for the Production of RNA and Ribozymes

As a result of both the therapeutrc (xc1) and structural (2) interest in RNA, there has been an increased demand for larger amounts of oligoribonucleotides. Although great progress has been made in improving the methods for DNA synthesis, such that production of large amounts has become common ...

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Preparation of Templates for Production of Ribozymes and Substrates

Transcription by DNA dependent bacteriophage RNA polymerases has become a very powerful technique in molecular biology. Single-stranded RNAs generated by in vitro transcription can be used as substrates in a variety of experiments ranging from splicing and translation to structu ...

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The Use of Cell and Organ Culture for the Study of Secreted Mucins

Mucins are major differentiated products of mucosal cells throughout the body and are thus important markers of normal and disease development. The use of human colonic cell lines as a model of the adenoma-carcinoma sequence is of particular interest because it allows the changes in express ...

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Purification of Gastrointestinal Mucins and Analysis of Their O-Linked Oligosaccharides

The role of mucus in the protection of intestinal, bronchial, nasopharyngeal, and cervical mucosae has long been recognized, but poorly understood. Research has been stimulated by the expectation that an underlying mucus abnormality might be present, not only in diseases such as cystic fi ...

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Strategies for Preliminary Characterization of Novel Amphoteric Glycosphingolipids

The generally accepted paradigm for the classification of glycosphingolipids into neutral and acidic classes has proved to be an oversimplification, at least, when considering members of the Invertebrata. The detailed occurrence and frequency of electrically neutral, but amph ...

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TLC in Structure and Recognition Studies of Glycosphingolipids

Glycosphingolipids (GSLs) are primarily located in the plasma membrane of animal cells, but are also found in association with intracellular organelles (1,2) GSLs consist of two structural elements: a lipophilic membrane anchor, the ceramide portion, which is formed by a long chain amin ...

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Analysis of the Carbohydrate and Lipid Components of Glycosylphosphatidylinostol Structures

Glycosylphosphatidylinositols (GPIs) are a family of structures that contain the structural motif: Manα1-4GlcNH2α1-6myo-Inositol-1-PO4-lipid. This common substructure suggests that this family of molecules are biosynthetically related and differentiates them f ...

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Conformational Analysis of Biantennary Glycopeptides with a Resonance Energy Transfer Technique

The carbohydrate components in glycoprotein receptors, antibodies, enzymes, toxins, and hormones are increasingly gaining attention as biological recognition signals (1,2). It is, therefore, important to study the conformation of oligosaccharides in solution to better und ...

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Characterization of Protein Glycosylation

The majority of proteins are posttranslationally modified, the most significant change being glycosylation, i.e., the attachment of one or more oligosaccharide chains. Because of their long history, but also relative neglect until recently, the terminology for saccharides is dive ...

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Analytical Methods for the Study of O-GlcNAc Glycoproteins and Glycopeptides

Over the past decade, numerous nuclear and cytosolic glycoproteins have been shown to be modified by single N-acetylglucosamine (O-GlcNAc) residues attached to the side chain hydroxyl groups of serine or threonine (1–3). This unique postranslational modification (O-GlcNAcylat ...

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Analysis of Asparagine-Linked Oligosaccharides by Sequential Lectin-Affinity Chromatography

Sugar moieties on the cell surface play one of the most important roles in cellular recognition. In order to elucidate the molecular mechanism of these cellular phenomena, assessment of the structure of sugar chains is indispensable. However, it is difficult to elucidate the structures of ce ...

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