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Preparation of Nested Deletions

Procedure:1) Need to cut 10 µg of plasmid in two spots (‘A’ and ‘B’) in polylinker. ‘A’ cut is with a restriction enzyme which gives a 3’ recessed end (exonuclease sensitive) next to insert. Since ...

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DIG Southern Blot Solutions

0.25M HCl (1L)20.66mL HCl 979.34mL dH2O *add acid to wateundefined 1M ammonium acetate 0.02M NaOH (1L)77.08g ammonium acetate 0.8g NaOH Fill with dH2O 0.5X SSC 0.1% SDS (1L)25mL 20X SSC 10mL 10% SDS 965mL dH ...

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DIG Southern Blotting

Smith and Summers 1980. Anal. Biochem. 109:123-129.Digest 10-15 µg genomic DNA with desired restriction enzyme overnight at 37oC. Run digest on a 1% TBE agarose gel at 100V until 1st blue dye reaches ...

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Southern Blot

Genomic DNA Digest10 µl DNA (10 µg) 3 µl 10X Buffer 1-2 µl Restriction Enzyme (40 units) 3 µl 10mM Spermidine-HCl 3 µl 1 mg/ml BSA 10 µl H2O Total volume: 30 µlNote: Use DNA from a standard tail prep ...

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SOUTHERN BLOTTING PROTOCOL

SOLUTIONSLysis Buffer 0.1 M Tris pH 8.0 0.2 M NaCl 5 mM EDTA

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Southern Transfer to Nylon Membrane in NaOH

Principle: Refer to Southern Transfer with Zetabind membrane. The NaOH transfer may be a more efficient transfer method for larger sized fragments. It is the method of choice for pulsed-field gels con ...

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Worm genomic Southern blots

I. Preparing worm genomic DNA: requires 1-2 days to seed agarose plates a few days for the worms to grow 1-2 days to prep the DNA1. Seed large agarose plates with HB101. Agarose is preferred over agar ...

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PCR Method to Make Radioactive Probes

MaterialsHot Probe dNTP Mix:25 mM dATP25 mM dTTP25 mM dGTP2.5 mM dCTPHybridization Solution:5X SSC0.5% (w/v) Blocking Reagent0.1% (w/v) N-lauroylsarcosine Na-salt0.02% (w/v) SDS50% FormamideBlot Wash ...

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Probe DNA Preparation for Southern Blotting

IRS-1 Probe DNA Prep 1. From glycerol stocks (in �80ºC freezer) grow up bacteria. Use amp LB. 2. Use a Qiagen prep to purify the DNA. 3. Perform the following digest: ...

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Making Combination Markers for Size Standards on Southern Blots

Preface: Digesting lambda DNA (BRL) with a specific restriction enzyme will result in lambda DNA fragments of known size. Three separate lambda digests (BglII BstEII and XhoI) will give 23 fragments w ...

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Southern Analysis of Mouse Toe / Tail DNA

You will require the following: -Tail buffer 50ml 10% SDS 5ml 1M Tris pH 7.50.5ml 0.5M EDTA5ml 5M NaCl 1.5ml DDW38ml -Phenol/chloroform (1:1 mixture) -0.5M EDTA -4M NH4Ac -Absolute EtOH -70% EtOH -T ...

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Tail Chop Southern Protocol

About 1/2 to 1 cm of tail should be cut from properly marked mice (using toe or ear clipping etc) about the age of 2-3 weeks. Place these tails into marked 1.5 ml Eppindorf tubes for processing; they ...

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Tail Chop Southern Protocol

About 1/2 to 1 cm of tail should be cut from properly marked mice (using toe or ear clipping etc) about the age of 2-3 weeks. Place these tails into marked 1.5 ml Eppindorf tubes for processing; they ...

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Methods for DNA isolation

A. Large scale double-stranded DNA isolationThe method used for the isolation of large scale cosmid and plasmid DNA is an unpublished modification (16) of an alkaline lysis procedure (1718) followed b ...

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Recovery plasmids from dead bacterial/plasmid

We store our all of our plasmids as bacterial host stocks at -80 stored in 7% DMSO. Such stocks are very long-lived giving robust bacterial growth even after 10-15 years. However occasionally we hav ...

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Dirty Mini Preps

1) Grow 3-5 ml over-night E. coli cultures containing your plasmid2) Spin down 1.5 ml cells3) Resuspend in 300 µl Buffer P1 w. RNase A4) Add 300 µl Buffer P2.Mix by invertin ...

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Mini-preps

Stuff you need:TENS Buffer10 mM Tris-HCl pH 8.01 mM EDTA pH 8.00.1 N NaOH0.5% SDSTE pH 8.010 mM Tris-HCl pH 8.01 mM EDTA pH 8.095% EtOH precooled to -20 deg C70% EtOH at room temperature3 M Na Acetate ...

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Plasmid Mini-Prep

Objective:Mini-Prep procedure is used to isolate small plasmid DNA from bacteria while limiting contaminating proteins and genomic DNA. The plasmid quality is acceptable for restriction analysis seque ...

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PLASMID MIDI-PREP FROM BACTERIA

PREPARE SOLUTIONS 1. Glycerol mix (1 L):Weigh 25 grams (liquid weight) of glycerol and add dH2O to 1 Liter (Autoclave)2. Potassium mix (1 L):Mix 170 mL of 1M KH2PO4 (monobasic) 720 mL of 1M K2HPO4 (di ...

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Purification of Plasmid from 50 ml-culture

1. Shake E. coli harboring plasmid at 37 C overnight in 50 ml of TB containing appropriate antibiotics. (when using ampicillin addition of the antibiotics to 100-200 ug/ml rather than usual 50 ug/ml m ...

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