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文献和实验Basic Analysis of NimbleGen ChIP-on-chip Data using Bioconductor/R
biological states. Overall, many tools do not provide sufficient flexibility and transparency for the user to know and control what is actually happening with the data. This will ultimately lead to non-reproducibility and/or analysis failures once the tools
LC‐MS Data Processing with MAVEN: A Metabolomic Analysis and Visualization Engine
. Benton, H.P., Wong, D.M., Trauger, S.A., and Siuzdak, G. 2008. XCMS2: Processing tandem mass spectrometry data for metabolite identification and structural characterization. Anal. Chem. 80:6382‐6389
Analyzing Protein‐Protein Interactions from Affinity Purification‐Mass Spectrometry Data with SAINT
the number of baits, the number of biological replicates per bait, and control purifications. Here we give a detailed account of input data format, control data, selection of high?confidence interactions, and visualization of filtered data. We explain
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