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文献和实验sequence entries), syn (synthetic and chimeric sequence entries) and una (unanotated sequence entries) were not used. All of the complete sequenced protein coding genes (CDS's) are used. Codons containing ambiguous base were excluded from count
Basic Analysis of NimbleGen ChIP-on-chip Data using Bioconductor/R
Introduction Hybridization of chromatin immuno-precipitation (ChIP) material to tiling arrays at NimbleGen service facilities usually leaves the customer with a set of data files that are of limited use. Most information about the experiment
AND METHODS "DNA was extracted from 5 plant species (American chestnut, " "Castanea dentata; American cranberry, Vaccinium macrocarpon; geranium, " "Pelargonium x hortorum; Peters Mountain mallow, Iliamna corei; and " "peanut, Arachis hypogaea) and 1 fungus
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