PDK4基因正向调控绵羊脂肪细胞中的脂肪沉积

PDK4 gene positively regulates fat deposition in ovine adipocytes.

作者信息Cheng Xiao, Shaoying Yang, Wenjun Zhao, Yu Liu, WenWen Fang, Lisheng Miao, Xin Li, Yang Cao, Haiguo Jin, Yang Cao
PMID41459085
发布时间2025-12-12
DOI10.3389/fnut.2025.1706055

实验完整度

包含体外细胞过表达、敲除实验及多组学分析,但缺乏体内动物模型验证。

主要模型

绵羊皮下脂肪前体细胞 NIH/3T3小鼠胚胎成纤维细胞

重点核对

绵羊前体脂肪细胞分离自3只2月龄雄性杂交羊(杜泊×小尾寒羊) PDK4过表达质粒转染6小时后,培养48小时 脂质组学每组6个生物学重复,转录组学每组3个生物学重复 NIH/3T3细胞PDK4敲除采用CRISPR/Cas9,电穿孔条件1300V, 30ms, 1脉冲 甘油三酯含量使用商业试剂盒(Prilax)在550nm测量

摘要

Introduction: Intramuscular fat (IMF) content is a crucial factor affecting meat quality and flavor in sheep. Our previous studies demonstrated that the pyruvate dehydrogenase kinase 4 (PDK4) expression increases during adipocyte differentiation and is positively correlated with IMF content in sheep. However, the effects of the PDK4 gene on lipid metabolism in ovine adipocytes remain unclear.Methods: The effects of PDK4 overexpression on ovine adipocyte differentiation and fat deposition were investigated. Subsequently, the key lipids and genes affected by PDK4 overexpression were identified using lipidomic and transcriptomic sequencing. Furthermore, a PDK4-knockout NIH/3T3 cell line was generated to verify the evolutionarily conserved functions of PDK4 and to examine the expression of candidate genes in a murine model.Results: PDK4 overexpression significantly increased triglyceride deposition by 2.32-fold in ovine adipocytes (p = 0.001) but did not affect PPARγ mRNA or protein expression levels (p > 0.05). A total of 80 differentially expressed lipids (DELs) and 24 differentially expressed genes (DEGs) were identified between the overexpression (Over) and negative control (NC) groups, including 20 upregulated DELs, 60 downregulated DELs, 21 upregulated DEGs, and 3 downregulated DEGs. Additionally, PDK4 overexpression altered lipid content, composition, carbon chain length, and degree of unsaturation in ovine adipocytes. TMEM273, one of the DEGs, was negatively affected by PDK4 overexpression and closely correlated with 7 DELs (adjusted p < 0.01, |R| > 0.9). In the murine cell model, PDK4 knockout of NIH/3T3 (KO) cells significantly decreased triglyceride deposition by 0.77-fold (p < 0.01) but did not affect BSCL2 expression (p = 0.08). TMEM273 expression was significantly increased by 2.78-fold in pre-differentiated KO cells (p = 0.018) and significantly decreased by 0.83-fold in differentiated KO cells (p = 0.005).Conclusion: PDK4 positively regulates fat deposition in both ovine and murine adipocytes. TMEM273 expression is negatively affected by PDK4 and correlated with lipid metabolism in sheep and mice.

实验结论

提炼研究问题、关键发现与证据,快速把握文章的核心贡献。

研究问题
PDK4基因对绵羊脂肪细胞脂质代谢的影响及其机制。
核心机制
PDK4通过调节丙酮酸代谢通量,促进甘油三酯合成,从而正向调控脂肪沉积。
主要证据
PDK4过表达显著增加绵羊脂肪细胞甘油三酯含量2.32倍,PDK4敲除显著降低NIH/3T3细胞甘油三酯含量0.77倍。
研究意义
PDK4可能作为改善绵羊肌内脂肪含量的关键候选基因,为分子育种提供新见解。

研究路径

按研究推进顺序梳理实验设计、验证步骤与关键观察。

1

绵羊前体脂肪细胞分离与分化

建立绵羊脂肪细胞体外分化模型

从3只杜泊×小尾寒羊杂交羊羔皮下脂肪组织分离前体脂肪细胞,用含诱导剂I和II的培养基诱导分化。

2

PDK4过表达及验证

验证PDK4过表达效率

将PDK4过表达质粒转染绵羊前体脂肪细胞,通过qPCR检测PDK4 mRNA水平。

3

脂质组学分析

鉴定PDK4过表达影响的脂质种类

使用MTBE方法提取细胞脂质,LC-MS/MS鉴定脂质,筛选差异表达脂质。

4

转录组学分析

鉴定PDK4过表达影响的下游基因

提取RNA,构建cDNA文库,DNBSEQ平台测序,进行差异表达和富集分析。

5

脂质组与转录组联合分析

识别与脂质代谢相关的关键基因

通过O2PLS、CCA和Pearson相关分析,筛选与差异脂质相关的重要基因。

6

PDK4敲除NIH/3T3细胞系构建

验证PDK4功能的保守性

使用CRISPR/Cas9敲除NIH/3T3细胞的PDK4基因,并验证敲除效率及对脂肪沉积的影响。

7

PDK4敲除的NIH/3T3细胞脂肪沉积分析

评估敲除PDK4对脂肪沉积的影响

对KO和WT细胞进行油红O染色、甘油三酯定量及下游基因表达检测。

研究方法

按研究目的归类文中使用的方法,便于定位所需技术。

产品清单

实验环节名称品牌货号
胶原酶IISangon Biotech--
DMEM-F12培养基Sigma--
胎牛血清Gemini Bio-Products--
青霉素/链霉素Sigma--
胰岛素Sigma--
地塞米松Sigma--
IBMXSigma--
Lipofectamine 2000转染试剂Thermo Fisher Scientific--
Opti-MEM培养基Invitrogen--
CSH C18色谱柱Waters--
超高效液相色谱仪Nexera LC-30AShimadzu--
Q-Exactive Plus质谱仪Thermo Fisher Scientific--
TRIzol试剂Thermo Fisher Scientific--
NanoDrop One分光光度计NanoDrop Technologies--
Qubit 3.0荧光计Life Technologies--
DNBSEQ测序平台BGI Technologies Inc.--
嘌呤霉素----
逆转录试剂盒TaKaRa--
LightCycler 480实时荧光定量PCR仪Roche Applied Science--
蛋白提取试剂盒Solarbio--
BCA蛋白定量试剂盒Beyotime--
PPARG抗体Biossbs-0530R
β-actin抗体Biossbs-1571R
ChemiScope 6000 Touch成像系统Clinx Science Instruments--
SPSS 17.0统计软件IBM--
GraphPad Prism 6.0绘图软件GraphPad Software--

关键环节

汇总复现实验时建议重点确认的条件及原文阅读提示。

环节核对要点
绵羊前体脂肪细胞分离与分化
动物来源(3只2月龄雄性杜泊×小尾寒羊杂交羊)、分离方法(0.2%胶原酶II消化1小时)、培养条件(DMEM-F12、10% FBS、1%青霉素/链霉素)、诱导剂配方(10 μg/mL胰岛素、1.0 μM地塞米松、0.5 mM IBMX处理48小时,随后10 μg/mL胰岛素处理48小时)、分化时间(4或6天)
阅读提示:见Materials and Methods - Isolation, culture, and differentiation of preadipocytes
PDK4过表达
质粒构建(pEX4-PDK4,XhoI和HindIII酶切位点)、转染量(3 μg质粒、5 μL Lipofectamine 2000、200 μL Opti-MEM)、转染时间(6小时)、后续培养(48小时)
阅读提示:见Materials and Methods - Transfection and verification
脂质组学分析
生物学重复数(每组6个)、提取方法(MTBE法)、LC-MS/MS参数(CSH C18柱、正负ESI模式)、差异脂质筛选标准(VIP>1, FC≥1.5或≤0.67, p<0.05)
阅读提示:见Materials and Methods - Lipidome sequencing 和 Results - Lipidome analysis
转录组学分析
生物学重复数(每组3个)、测序平台(DNBSEQ)、参考基因组(Oar_rambouillet_v2.0)、差异基因筛选标准(|log2FC|>1, p-adj<0.05)
阅读提示:见Materials and Methods - Transcriptome sequencing 和 Results - Transcriptome analysis
NIH/3T3细胞PDK4敲除
gRNA设计、电穿孔条件(1300V, 30ms, 1脉冲)、嘌呤霉素筛选浓度(2 μg/mL)、敲除验证(PCR和Sanger测序)
阅读提示:见Materials and Methods - Generation of PDK4-knockout NIH/3T3 cell line