整合基因组分析鉴定UBTF串联重复为儿童急性髓系白血病中的一种复发性突变

Integrated Genomic Analysis Identifies UBTF Tandem Duplications as a Recurrent Lesion in Pediatric Acute Myeloid Leukemia

作者信息Masayuki Umeda, Jing Ma, Benjamin J Huang, Kohei Hagiwara, Tamara Westover, Sherif Abdelhamed, Juan M Barajas, Melvin E Thomas, Michael P Walsh, Guangchun Song, Liqing Tian, Yanling Liu, Xiaolong Chen, Pandurang Kolekar, Quang Tran, Scott G Foy, Jamie L Maciaszek, Andrew B Kleist, Amanda R Leonti, Bengsheng Ju, John Easton, Huiyun Wu, Virginia Valentine, Marcus B Valentine, Yen-Chun Liu, Rhonda E Ries, Jenny L Smith, Evan Parganas, Ilaria Iacobucci, Ryan Hiltenbrand, Jonathan Miller, Jason R Myers, Evadnie Rampersaud, Delaram Rahbarinia, Michael Rusch, Gang Wu, Hiroto Inaba, Yi-Cheng Wang, Todd A Alonzo, James R Downing, Charles G Mullighan, Stanley Pounds, M Madan Babu, Jinghui Zhang, Jeffrey E Rubnitz, Soheil Meshinchi, Xiaotu Ma, Jeffery M Klco
PMID35176137
期刊Blood Cancer Discov
发布时间2022-05-05
DOI10.1158/2643-3230.BCD-21-0160

摘要

儿童急性髓系白血病(AML)复发的遗传学机制尚未得到全面阐明。本文通过对136例复发儿童AML的基因组变异谱进行分析,发现9%的复发AML病例存在上游结合转录因子(UBTF)第13外显子串联重复(TD)突变。UBTF-TD AML通常表现为正常核型或8号染色体三体,同时伴有WT1突变或FLT3-ITD,但不伴有其他已知致癌融合。这些UBTF-TD事件在疾病进展过程中保持稳定,并存在于原始克隆中。此外,我们观察到UBTF-TD AML约占所有初诊儿童AML的4%,在成人中较为罕见,且与不良预后和微小残留病(MRD)阳性相关。在原代造血细胞中表达UBTF-TD足以增强连续克隆形成能力,并驱动与UBTF-TD AML相似的转录程序。综上,这些临床、基因组和功能数据确立了UBTF-TD作为AML中一种新的复发性突变。研究意义:本研究明确了复发儿童AML的突变谱,并鉴定出UBTF-TD作为一种新的复发性遗传变异。这些重复突变在儿童中更为常见,界定了一类具有中危细胞遗传学异常、FLT3-ITD和WT1改变的AML亚群,且与不良预后相关。相关评论见Hasserjian和Nardi撰写的文章(第173页)。本文在"本期亮点"专栏中重点推介(第171页)。

实验方法

产品清单

名称品牌货号
EasySep 人CD3阳性分选试剂盒IIStemCell Technologies17851
Quick-gDNA 小量制备试剂盒Zymo ResearchD3024
RNeasy 小量试剂盒Qiagen74104
Monarch 细胞和血液高分子量DNA提取试剂盒NEBT3050L
Covaris g-TUBECovaris520079
BluePippinSage ScienceBLU0001
SMRTbell 表达模板制备试剂盒 2.0Pacific Bioscience100–938–900
SMRT Cell 1M v3 LRPacific Bioscience101–531–001
Sequel 系统Pacific Bioscience--
高容量 RNA 转 cDNA 试剂盒Thermo Fisher#4387406
pENTR/D-TOPO Gateway 入门载体Thermo FisherK240020
FuGene HD 转染试剂PromegaE2311
MycoAlert 支原体检测试剂盒Lonza#LT08–118
StemSpan SFEM II 培养基STEMCELL Technologies#09655
MethoCult H4435STEMCELL Technologies#04435
IncuCyteSARTORIUS4647
蛋白质凝胶Bio-Rad#4561033
硝酸纤维素膜Bio-Rad1620252
Odyssey CLx 成像系统LI-COR Biosciences9140
尼康 C2 激光扫描共聚焦显微镜Nikon--