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Computer Vision as a Tool to Study Plant Development

Morphological phenotypes due to mutations frequently provide key information about the biological function of the affected genes. This has long been true of the plant Arabidopsis thaliana, though phenotypes are known for only a minority of this model organism's approximately 25,000 g ...

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Metabolomics of Plant Volatiles

Plants communicate with their surrounding ecosystems using a diverse array of volatile metabolites that are indicative of the physiological status of the emitter. A variety of systems have been adapted to capture, analyze, identify, and quantify airborne metabolites released by pla ...

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Chemical Genomics Approaches in Plant Biology

Chemical genomics (i.e., genomics-scale chemical genetics) approaches are based on the ability of low-molecular-mass molecules to modify biological processes. Such molecules are used to affect the activity of a protein or a pathway in a manner that is tunable and reversible. A major advant ...

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Comparison of Quantitative Metabolite Imaging Tools and Carbon-13 Techniques for Fluxomics

The recent development of analytic technologies allows fast analysis of metabolism in real time. Fluxomics aims to define the genes involved in regulation of flux through a metabolic or signaling pathway. Flux through a metabolic or signaling pathway is determined by the activity of its ind ...

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Democratization and Integration of Genomic Profiling Tools

Systems biology is a comprehensive means of creating a complete understanding of how all components of an organism work together to maintain and procreate life. By quantitatively profiling one at a time, the effect of thousands and millions of genetic and environmental perturbations on the ...

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Maize Embryogenesis

Plant embryo development is a complex process that includes several coordinated events. Maize mature embryos consist of a well-differentiated embryonic axis surrounded by a single massive cotyledon called scutellum. Mature embryo axis also includes lateral roots and several de ...

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Arabidopsis Embryogenesis

Embryogenesis in higher plants consists of two major phases, morphogenesis and maturation. Morphogenesis involves the establishment of the embryo’s body plan, whereas maturation involves cell expansion and accumulation of storage macromolecules to prepare for desiccatio ...

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Spruce Embryogenesis

Somatic embryogenesis, the process in which embryos, similar in morphology to their zygotic counterparts, are induced to develop in culture from somatic cells, is a suitable model system for investigating the regulation of embryo development. Through this process, a large number of embr ...

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Promoter Trapping System to Study Embryogenesis

Promoter trapping is a particular gene trap strategy that represents a valuable tool for the discovery of specific cell-type markers. The principle is to generate a collection of transgenic lines with random insertions of a promoter-less reporter gene and to screen for specific reporter a ...

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Visualization of Auxin Gradients in Embryogenesis

Embryogenesis in Arabidopsis thaliana depends on the proper establishment and maintenance of local auxin accumulation. In the course of elucidating the connections between developmental progress and auxin distribution, several techniques have been developed to investig ...

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Intercellular Trafficking of Macromolecules During Embryogenesis

Plasmodesmata provide routes for communication and nutrient transfer between plant cells by interconnecting the cytoplasm of adjacent cells. A simple fluorescent tracer-loading assay was developed to monitor patterns of cell to cell transport via plasmodesmata specifical ...

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Detection of Programmed Cell Death in Plant Embryos

Programmed cell death (PCD) is an integral part of embryogenesis. In plant embryos, PCD functions during terminal differentiation and elimination of the temporary organ, suspensor, as well as during establishment of provascular system. Embryo abortion is another example of embryon ...

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In Vitro Fertilization With Isolated Higher Plant Gametes

Methods have been developed to isolate gametes of higher plants and to fertilize them in vitro. Zygotes, embryos, fertile plants and endosperm can now be obtained from in vitro fusion of pairs of sperm and egg cells and of pairs of sperm and central cells, respectively. This allows examination of the ea ...

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Culture and Time-Lapse Tracking of Barley Microspore-Derived Embryos

Barley microspore embryogenesis represents an attractive system to study stress-induced cell differentiation and is a valuable tool for efficient plant breeding. In contrast to zygotic embryogenesis, all developmental stages are freely accessible at a large scale for observa ...

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In Vitro Culture of Arabidopsis Embryos

Embryogenesis of Arabidopsis thaliana follows a nearly invariant cell division pattern and provides an ideal system for studies of early plant development. However, experimental manipulation with embryogenesis is difficult, as the embryo develops deeply inside maternal tis ...

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Laser-Capture Microdissection to Study Global Transcriptional Changes During Plant Embryogenesis

A key objective in the study of plant embryogenesis is to identify genes expressed in temporal and spatial patterns during development, in order to understand transcriptional control mechanisms regulating pattern formation, differentiation and morphogenesis. Mutagenic ap ...

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qRT-PCR of Small RNAs

Plant small RNAs are a class of 19- to 25-nucleotide (nt) RNA molecules that are essential for genome stability, development and differentiation, disease, cellular communication, signaling, and adaptive responses to biotic and abiotic stress. Small RNAs comprise two major RNA classes, s ...

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Cloning New Small RNA Sequences

Small RNAs are key molecules in RNA silencing pathways that exert sequence-specific regulation of gene expression and chromatin modifications in many eukaryotes. In plants, endogenous small RNAs, including microRNAs (miRNAs) and trans-acting small interfering RNAs (tasiRNA ...

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Phytic Acid

Phytic acid, a cyclic compound (1,2,3,4,5,6-hexakis dihydrogen phosphate myoinositol) is a common storage form of phosphorus in seeds and is also considered as an antinutritional factor. Phytic acid, as a result of possessing negative charge at a wide range of pH values, has strong affi nity to bind ...

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Phytohemagglutin/Lectin

Lectins are proteins in nature with molecular weight ranging from 60,000 to 100,000 Da. Many lectins contain covalently bound sugar moieties and are glycoprotein in nature. These are also called phytohemagglutins because they agglutinate red blood cells.

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