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Murine Macrophages: A Technical Approach

In this chapter, we describe current protocols used for the characterization of macrophages (MΦ) in mouse tissues and in cell suspensions from spleen and lymph nodes. Also, we include a brief description of a complementary approach: culture of primary MΦ. Although culture MΦ are extremely use ...

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Lentiviral Transduction of Immune Cells

Gene transfer into mammalian cells has been of crucial importance for studies determining the role of specific genes in the differentiation and cell fate of various hematopoietic lineages. Until recently, the majority of these studies were performed in transformed cell lines due to diff ...

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Clinical Analysis of Human Natural Killer Cells

Natural killer (NK) cells are major actors of innate immune responses against viruses, bacteria, parasites, and other mediators of pathology such as malignant transformation. These cells are also directly implicated in the link between innate and adaptive immunity, shaping T-cell re ...

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ENU Mutagenesis in Mice

Forward genetics has led to many “breakthrough” discoveries, and with the mouse genome almost fully sequenced, the creation of phenotypes through random germline mutagenesis has become an efficient means by which to find the function of yet undescribed genes. In this chapter, we will provi ...

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Axenic Mice Model

The interaction of an organism with surrounding microbial communities has a profound impact on its anatomy, physiology, and behavior. The innate immune system plays a major role in the crosstalk between bacteria and the hosts they colonize. Axenic mice provide a powerful in vivo controlled m ...

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Reverse Genetics Analysis of Antiparasitic Responses in the Malaria Vector, Anopheles gambiae

Anopheles mosquitoes are the major vectors of human malaria parasites. Mosquito–parasite interactions are critical for disease transmission and therefore represent a potential target for malaria control strategies. Mosquitoes mount potent antiparasitic responses, and ...

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In Vivo Analysis of Zebrafish Innate Immunity

Among vertebrate model species, the zebrafish embryo combines at an unprecedented level optical accessibility with easy genetic manipulation. As such, it is gaining recognition as a powerful model to study innate immunity. In this chapter, we provide a protocol for the generation of zebr ...

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Drosophila Immunity: Methods for Monitoring the Activity of Toll and Imd Signaling Pathways

Invertebrates lack an adaptive immune system and rely on innate immunity to resist pathogens. The response of Drosophila melanogaster to bacterial and fungal infections involves two signaling pathways, Toll and Imd, both of which activate members of the nuclear factor (NF)-κB family of t ...

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Investigating the Involvement of Host Factors Involved in Intracellular Pathogen Infection by RNAi in Drosophila Cells

Intracellular pathogens represent a serious threat to human health. Although the biology and the virulence factors involved in intracellular bacterial infection are relatively well documented, little is known about the host factors involved in the infection process. This situa ...

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Genetic Analysis of Caenorhabditis elegans Innate Immunity

Innate immunity is an ancient and conserved defense mechanism. The worm Caenorhabditis elegans provides a useful tool for studying the function of the innate immune system at the molecular and cellular levels within the context of a whole organism. The powerful genetics of the worm, combined ...

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Models of Caenorhabditis elegans Infection by Bacterial and Fungal Pathogens

The nematode Caenorhabditis elegans is a simple model host for studying the relationship between the animal innate immune system and a variety of bacterial and fungal pathogens. Extensive genetic and molecular tools are available in C. elegans, facilitating an in-depth analysis of host d ...

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Measuring Cell-Wall-Based Defenses and Their Effect on Bacterial Growth in Arabidopsis

Plants are resistant to most potentially pathogenic microbes. Frequently, resistance results from defenses activated upon recognition of “non-self.” Invasion of a variety of pathogens, including Gram-negative bacteria, into plants is betrayed by the presence of pathogen-ass ...

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Innate Immunity Genes as Candidate Genes: Searching for Relevant Natural Polymorphisms in Databases and Assessing Family-Based Association of Polymorp

The identification of genes underlying complex traits is a challenging task, and there are a limited number of confirmed genes that influence human complex diseases. In particular, few genes involved in complex diseases related to immune response, such as infectious diseases and inflam ...

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KIR Genotyping and Analysis: Genotyping and Disease Association Analysis

The genes encoding the killer immunoglobulin-like receptors (KIR) are situated within a segment of DNA that has undergone expansion and contraction over time due in large part to unequal crossing over. Consequently, individuals exhibit considerable haplotypic variation in terms of ...

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Bacterial Artificial Chromosome Transgenesis Through Pronuclear Injection of Fertilized Mouse Oocytes

In the mouse, conventional transgenes often produced unpredictable results mainly because they were too small to recapitulate a natural gene context. Bacterial artificial chromosomes (BACs) are large enough to encompass the natural context of most mammalian genes and consequen ...

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Bioluminescence Imaging to Evaluate Infections and Host Response In Vivo

The continued prospect of emerging pathogens and recent events including the acceptance of widespread drug resistance and threats of bioterrorism have introduced the necessity be creative in our development of therapies for bacterial infections. Many pathogens have both acute a ...

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Intravital Two-Photon Imaging of Natural Killer Cells and Dendritic Cells in Lymph Nodes

Two-photon microscopy makes it possible to image in real-time fluorescently labeled cells located in deep tissue environments. We describe a procedure to visualize the behavior of natural killer (NK) cells and dendritic cells (DC) in the lymph nodes of live, anesthetized mice. Intravital ...

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Dissection of the Antiviral NK Cell Response by MCMV Mutants

Our understanding of virus control by natural killer (NK) cells relies mainly on in vitro observations. The significance of these findings for virus control in vivo is not yet fully understood. Complexity is added by the fact that many viruses, particularly herpesviruses, are equipped with s ...

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Analyzing AntibodyFc-Receptor Interactions

Cellular receptors for immunoglobulins (Fc-receptors; FcR) are central mediators of antibody-triggered effector functions. Immune complex (IC) binding to FcRs results in a variety of reactions such as the release of inflammatory mediators, antibody dependent cellular cytot ...

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The Use of Adjuvants in Experimental Vaccines: II. Water-in-Oil Emulsions: Freunds Complete and lncomplete Adjuvants

As mentioned in Chapter 9, Freund’s complete adjuvant (FCA), produced by the Statens Seruminstitut (Copenhagen, Denmark), was chosen as the standard adjuvant preparation because of its extensive use in experimental vaccines in animals, its strong adjuvant effect, and the considerab ...

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