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Electron Crystallography of Membrane Proteins

Electron crystallography studies the structure of two-dimensional crystals of membrane proteins or other crystalline arrays. This method has been used to determine the atomic structures of six membrane proteins and tubulin, as well as several other structures at a slightly lower res ...

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Cryoelectron Microscopy of Icosahedral Virus Particles

With the rapid progresses in both instrumentation and computing, it is increasingly straightforward and routine to determine the structures of icosahedral viruses to subnanometer resolutions (6–10 Å) by cryoelectron microscopy and image reconstruction. In this resolution ra ...

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Three-Dimensional Reconstruction of Chromosomes Using Electron Tomography

The evolvement of preparative methods in structural studies has always been as important as the development of sophisticated equipment. Software development is also a significant part for three-dimensional (3D) structural studies using electron tomography methods (ETMs). Ad ...

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Whole-Mount Immunoelectron Tomography of Chromosomes and Cells

Standard immunogold-labeling methods in transmission electron microscopy (TEM) are unable to locate immunogold particles in the depth direction. This inability does not only concern bulky whole mounts, but also sections. A partial solution to the problem is stereo inspection. Howe ...

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Conventional Specimen Preparation Techniques for Transmission Electron Microscopy of Cultured Cells

This chapter covers the conventional methods and considerations for preparing cultured cells for examination in the transmission electron microscope. Techniques for handling cells grown in liquid culture, as well as on substrates such as culture dishes or agar, are discussed. Direc ...

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Three-Dimensional Cryotransmission Electron Microscopy of Cells and Organelles

Cryoelectron microscopy of frozen-hydrated specimens is currently the only available technique for determining the “native” three-dimensional ultrastructure of individual examples of organelles and cells. Two techniques are available, stereo pair imaging and electron ...

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Electron Energy-Loss Spectroscopy as a Tool for Elemental Analysis in Biological Specimens

A transmission electron microscope (TEM) accessory, the energy filter, enables the establishment of a method for elemental microanalysis, the electron energy-loss spectroscopy (EELS). In conventional TEM, unscattered, elastic, and inelastic scattered electrons contribu ...

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Cryoplaning Technique for Visualizing the Distribution of Water in Woody Tissues by Cryoscanning Electron Microscopy

The protocol of cryoplaning techniques that to examine the distribution of water in living tree stems by cryoscanning electron microscopy have been developed and described. In brief, the procedures are as follows: First, a portion of transpiring stem is frozen in the standing state with liqu ...

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Conventional Specimen Preparation Techniques for Scanning Electron Microscopy of Biological Specimens

This chapter covers conventional methods for preparing biological specimens for examination in the scanning electron microscope (SEM). Techniques for handling cells grown in liquid culture, as well as on substrates such as culture dishes, slide culture chambers or agar, are discuss ...

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X-Ray Microanalysis in the Scanning Electron Microscope

X-ray microanalysis conducted using the scanning electron microscope is a technique that allows the determination of chemical elements in bulk or semithick specimens. The lowest concentration of an element that can be detected is in the order of a few mmol/kg or a few hundred parts per million, and ...

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Static Secondary Ion Mass Spectrometry for Biological and Biomedical Research

Static secondary ion mass spectrometry (SSIMS) is a capable of providing detailed atomic and molecular characterization of the surface chemistry of biological and biomedical materials. The technique is particularly suited to the detection and imaging of small molecules such as mem ...

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Botanical X-Ray Microanalysis in Cryoscanning Electron Microscopy

Modern microscopy in plant sciences has evolved in the direction of providing ultra-structural and analytical information simultaneously. Energy-dispersive X-ray microanalysis (EDX) is a powerful technique that allows the qualitative and quantitative measurement of ma ...

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Processing Biological Tissues for Ultrastructural Study

Biological tissues are passed through numerous procedures before they can be studied at the ultrastructural level with the electron microscope. Chemical fixation is widely used as a method for preserving structural detail and can be performed by simple immersion or total body vascular ...

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Processing Plant Tissues for Ultrastructural Study

This chapter describes conventional chemical fixation methods and techniques for studying the cellular and organelle ultrastructure of plant tissues under transmission electron microscopy. The general methods and procedures for the plant specimen preparation (includ ...

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Ultramicrotomy for Biological Electron Microscopy

This chapter describes the practical details involved in the successful sectioning of plastic-embedded specimens for electron microscopy. The focus will be on those parts of the process that are really key to the successful sectioning of any biological material, i.e., the proper shape and s ...

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Microwave-Assisted Processing and Embedding for Transmission Electron Microscopy

Microwave processors can provide a means of rapid processing and resin embedding for biological specimens that are to be sectioned and examined by transmission electron microscopy. This chapter describes a microwave-assisted protocol for processing, dehydrating, and embeddi ...

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Negative Staining of Thinly Spread Biological Samples

Negative staining is widely applicable to isolated viruses, protein molecules, macromolecular assemblies and fibrils, subcellular membrane fractions, liposomes and artificial membranes, synthetic DNA arrays, and also to polymer solutions. In this chapter, techniques are p ...

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Microscopic Analysis of Lipid Droplet Metabolism and Dynamics in Yeast

Lipid-associated disorders are a worldwide health concern and major efforts are directed toward understanding—at the molecular levels—mechanisms of lipid storage and degradation, in healthy and diseased states. Yeast is a widely used model organisms to study such processes at the c ...

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Purification of Yeast Membranes and Organelles by Sucrose Density Gradient Centrifugation

Many experiments require isolation and purification of membranes and organelles from a cell-free lysate. A combination of differential and sucrose density gradient centrifugation provides adequate separation of most yeast organelles in a single experiment. Yeast cells are co ...

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Use of Bimolecular Fluorescence Complementation in Yeast Saccharomyces cerevisiae

Visualization of protein–protein interactions in vivo offers a powerful tool to resolve spatial and temporal aspects of cellular functions. Bimolecular fluorescence complementation (BiFC) makes use of nonfluorescent fragments of green fluorescent protein or its variants ...

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